Desulfovibrio mangrovi: N1030_05605
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Entry
N1030_05605 CDS
T08614
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
psyf
Desulfovibrio mangrovi
Brite
KEGG Orthology (KO) [BR:
psyf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psyf03016
]
N1030_05605
Enzymes [BR:
psyf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
N1030_05605
Transfer RNA biogenesis [BR:
psyf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
N1030_05605
Prokaryotic type
tRNA splicing ligases
N1030_05605
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UZP68451
LinkDB
All DBs
Position
1223822..1225297
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AA seq
491 aa
AA seq
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MAKKKKRSQHHFAPPLFKDVSLIRQSEAEWHVLQQAPMRVPCHVFATDAIRSTLDLTTLR
QACNVATLPGIVTASMVMPDAHSGYGFPIGGVAAFDPDAGGVVSAGGVGFDIACGVRTLV
TGLTPDDVASKRTELAEALFHAIPCGVGTGGDIILNATSLDAMLEGGAKWAVAQGYGTQA
DLDHTEEGGHMRGARPEFVSAEARKRFTDQLGTLGSGNHYMEIQRVTDIYDPAAAQAYGI
AVDDILLSIHCGSRGLGHQIGTDFLPRMADKTEYFGIDLPEKELACAPILSDLGQEYLGA
MRAGINCALANRQVLTHLARDVFNTMFPHARLRLVYDVSHNTCKEEEHVVNGKKRRLFVH
RKGATRAFGPGHQELPGFYRSVGQPVIVGGSMGTPSYILAGCESSTKSFCSANHGAGRSM
SRTAARKIIHGKDMLSVLERMGISIRTSDMRGIAEEAPDAYKDVNAVVEATELAGLARRV
VRAVPLICIKG
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaaagaaaaaacgcagccagcatcatttcgccccgccactcttcaaggatgtg
agtctgatacgccagtcagaggccgagtggcacgtcttgcagcaggcccctatgcgcgtg
ccctgccacgttttcgccacggatgccatccgttcaacgctggacctcaccacgctccgt
caggcatgcaacgtggcgaccctgcccggcattgtcacggccagcatggtgatgccggac
gcccacagcggatatggtttccccatagggggcgtagcggcctttgatcccgacgcaggt
ggcgtggtctccgccggaggcgtcggtttcgacatcgcctgcggcgtgcgcacgctggtt
accggtcttaccccggacgatgtggcttccaaacgtactgaactggccgaagccctgttc
cacgccattccctgcggtgtcggcaccggaggagacataatcctgaatgccacctcgctt
gacgccatgctggaaggaggggccaaatgggctgtggcgcaggggtacggcacacaggcc
gaccttgatcataccgaagaaggggggcacatgcgtggagcccgccccgaattcgtctcg
gcagaagcgcgcaaacgcttcactgaccaactcggcacgcttggatccggcaaccattac
atggagatacagcgggtaaccgacatctacgaccccgctgccgcgcaagcatatggcatt
gccgttgacgacatactgctttccatccattgcggttcacgcgggctgggccaccagata
ggaactgatttcctcccccgcatggcggataagacggagtatttcggcatcgaccttccg
gaaaaggaacttgcctgcgctcccatcctctccgacctcggacaggaatatctgggggcc
atgcgtgcgggcatcaattgcgcccttgccaacaggcaggtgctgacccatctggcacgt
gacgttttcaacaccatgttcccgcatgcccgcctgcgactcgtatacgacgtgtcgcac
aatacttgcaaagaagaagagcatgtggtgaacggcaaaaaacgccggcttttcgtccac
cggaaaggggcaacccgcgccttcggtccgggacaccaggaactgccaggcttctatcgt
tcagtgggacagccggtcatagtcggcggcagtatgggaaccccgtcatacatcctcgcc
ggttgcgaaagctctaccaagagcttctgctcggcaaaccatggcgcaggcaggtccatg
agccgcactgcggcccgtaagatcatccacggcaaggacatgctttccgtgctggaacgc
atgggcataagcattcgcacttcggacatgcggggcattgccgaagaagctccggatgcg
tacaaggacgtaaacgccgtggtagaggccacggaactggcaggactcgcccgccgcgtt
gtgcgggccgttcctctcatctgcatcaaaggctag
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