Desulfovibrio mangrovi: N1030_08930
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Entry
N1030_08930 CDS
T08614
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
psyf
Desulfovibrio mangrovi
Pathway
psyf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psyf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N1030_08930 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psyf03019
]
N1030_08930 (rny)
Messenger RNA biogenesis [BR:
psyf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
N1030_08930 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
KH_2
Motif
Other DBs
NCBI-ProteinID:
UZP69075
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All DBs
Position
complement(1928688..1930247)
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AA seq
519 aa
AA seq
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MSLMSIGLVLLGAIIGAATGYAMHKVISSKRLNDAQELANRIIEEARKEAQAQKKEIILQ
GQDEIYNQKRTLEQEFKEREAEIKSRDHKLQEQSERLERKREQATQKEQELLVQEKDFTR
KERKLEEQAALLDEKVQEQELRLQEVSGLTADEAKERLFEEIESRTKHEAAKMMRQIEAE
AKETASRKAKEILATAIQRYAGDYVGEQTVTAVTLPSEDMKGRIIGREGRNIRALEAATG
VDLIIDDTPETVILSAYSPLRRQIAKMALERLISDGRIHPARIEDVVRKVQQELEVQLRE
VGEQATFDAGVHGIHADIIKLLGQLKYRTSFSQNVLQHSLEVASLCGMMAAELGLDVKRA
KRAGLLHDIGKAVDHEVEGPHAIIGADLAKKYGESKEIIHAIAAHHEDQPPKSALAVLVQ
AADSLSGARPGARKELLENYVKRLEDLEGIATAFEGVSKAYAIQAGREIRVMVNSDNVDD
DTTYLLCKDIAEQIEKNLTYPGQIRVTVIRERRAVGYAK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgagtctgatgtccatcgggctcgtcctgctgggtgccattatcggcgcagcaaccgga
tatgcgatgcataaggtcatttcctccaagcgtctgaacgatgctcaggaactggcgaat
cgcattatcgaagaagcgcgcaaggaagcacaggcccagaagaaggaaattatccttcag
gggcaggacgagatatacaaccagaaacgcacccttgaacaagagttcaaggagcgcgaa
gcagagataaagagtcgcgatcacaaactgcaggagcagtccgagcgccttgagcgcaag
cgtgagcaggcgactcagaaagagcaggaactgctcgttcaggaaaaggatttcacccgc
aaggagcgcaagctggaagagcaggctgctttgttggatgaaaaggttcaggagcaggaa
cttcgtctgcaggaagtctccggactgacggcagatgaggccaaagagcgcctgttcgaa
gagatcgaatcccgtaccaagcatgaagccgcaaagatgatgcggcagatcgaggcggaa
gccaaggaaaccgcaagccgcaaggccaaggaaattcttgcgaccgccattcagcgttat
gcgggcgactacgtgggcgaacagaccgttaccgctgttaccctgcccagcgaagatatg
aagggtcgcattatcggtcgcgaaggtcgtaacatccgtgcgcttgaagcagccaccggt
gttgacctgatcatcgacgacactcctgaaaccgtcattctttccgcttacagcccgttg
cgccgccagattgcaaagatggcgcttgagcggctcatcagcgacggccgcatccaccct
gcccgcattgaggacgttgtccgcaaggtgcagcaggaattggaagtacagctgcgtgaa
gtgggcgaacaggcaacgtttgacgccggtgtgcatggtattcatgccgatatcatcaag
ctgctcggtcagctcaagtaccgcaccagcttttcccagaacgtgctgcagcactcgctg
gaagtggcttccctgtgcggcatgatggctgcagaactcggccttgacgtaaagcgcgcc
aagcgcgccggcctgctgcacgacatcggcaaggctgtggaccacgaagtggaaggtccc
cacgccatcattggtgccgaccttgccaagaagtacggcgaaagcaaggaaatcatccac
gccatcgccgcacaccatgaagatcagccgcccaagtctgccttggctgtgcttgtgcag
gccgcggactccctttccggtgcccgtcccggcgcccgtaaggaactgcttgaaaactac
gtgaagcgccttgaagatctggaaggcattgccaccgcgttcgaaggtgtttccaaggca
tacgccatccaggctggccgtgaaatccgcgttatggtcaactccgacaacgtggacgat
gacaccacgtacctgctgtgcaaggacattgccgagcagatcgagaagaaccttacgtac
cccggccagattcgcgttacggtcattcgtgagcgcagggccgtaggttacgccaagtag
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