Desulfovibrio mangrovi: N1030_11625
Help
Entry
N1030_11625 CDS
T08614
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psyf
Desulfovibrio mangrovi
Pathway
psyf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psyf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N1030_11625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psyf03019
]
N1030_11625
03009 Ribosome biogenesis [BR:
psyf03009
]
N1030_11625
Enzymes [BR:
psyf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
N1030_11625
Messenger RNA biogenesis [BR:
psyf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
N1030_11625
Ribosome biogenesis [BR:
psyf03009
]
Prokaryotic type
rRNA processing factors
N1030_11625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UZP66264
LinkDB
All DBs
Position
complement(2547210..2548679)
Genome browser
AA seq
489 aa
AA seq
DB search
MSSSQKKGRRKLFISVLPGEQVEVSLAEEGSVQEYYVEMVHQAKTKGNIYKGTINNIDTN
LQAAFVSYGAEKNGFLQIDEVHPEYYSAPHDPNKGRKYPLIQKVLKAGMEVLVQVVKEPT
GTKGAFLTSYLSLPGRFLVLTPGRDQIGVSRKVEDDKERQRLKKLLEGLDPGENLGVIVR
TVSVDQPKTAMQRDLSFLKRLWKDVRKKATTEPSPSLIYQERDLATRSIRDYLTDDVTEV
WVDDENTAKSVEEFASLVFPRRGLQVRLHTAPETSLWERFNLQKQIEQIYSREVTMPSGG
RLVFDQTEALMAIDINSGKIAGKTNFESMALKTNTEAAMTIAQQLKLRDIGGQVVIDFIE
MRDRNHWREVEKTLRQAMKNDRARHDVGKMSRFGLLQVVRQRLGSSALSISSELCPCCGG
SGTRRNMEWQALQALKDILQKITHGKHNGSMRYECNGELALYLLNHKRERLFEMEQKFDL
RIEVTPKKD
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgagcagctcccagaaaaagggcagacgcaaactgtttatcagtgtgctgcctggtgag
caggtagaggtgtctctcgccgaagagggttccgtacaggaatactatgtggaaatggtc
caccaggcgaagaccaagggtaatatctataaaggtaccatcaacaacatcgatacgaac
ctgcaggccgcctttgtcagctacggcgcggaaaagaacggctttctgcagatagatgaa
gtgcatccggaatactattccgcaccgcacgatccgaacaagggacgcaagtaccccctt
atccagaaagtgctcaaggcaggcatggaagtgctcgtgcaggtggtgaaggaacccacc
ggcaccaagggcgcgttcctgacctcctatctttctcttcccggacgttttctcgtcctt
actcccggccgcgaccagataggcgtctcccgcaaggtggaggacgacaaggaacgtcag
cgcctgaaaaagcttctggaaggccttgaccccggcgagaacctcggcgttatcgtacgc
accgtgagcgtggatcagcccaagaccgccatgcagcgcgacttgagcttcctgaagcgt
ttgtggaaagacgtgcgcaagaaggccaccaccgagccttctcccagcctgatctatcag
gaacgcgacctcgccacccgttccatccgcgactatcttaccgacgacgtgacggaagtg
tgggtggatgacgagaacaccgccaagtccgttgaagaattcgccagcctcgtgttcccg
cgtcgcggcctgcaggtgcgcctgcacaccgcaccggaaacctcgctgtgggaacgcttc
aacctgcagaagcagatagagcagatctattcccgcgaagtgaccatgccttcgggcggc
agactggtcttcgaccagactgaagcgctcatggccatcgacatcaactccggcaagatc
gcgggcaagaccaatttcgaatccatggccctgaagaccaacaccgaagccgccatgacc
atcgcccagcaactcaagctgcgcgatatcggcgggcaggtggtcatcgacttcatcgaa
atgcgcgatcgcaaccactggcgcgaggtggaaaagaccctgcgtcaggccatgaagaac
gaccgagcccgtcatgatgtgggcaagatgagccgcttcggcctgctgcaggtggtgcgc
cagcgccttggttcctcggctctgtccatcagttccgaactgtgtccctgctgcggcggc
tccggcacgcgtcgcaacatggaatggcaggcccttcaggccctcaaggatattttgcag
aagattacccacggcaagcacaacggttccatgcgctatgaatgcaacggcgaactggcc
ctgtacctgctgaaccacaagcgcgaacgccttttcgagatggagcagaagtttgatctg
cgcatcgaggttactcccaagaaggattag
DBGET
integrated database retrieval system
