Desulfovibrio mangrovi: N1030_12950
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Entry
N1030_12950 CDS
T08614
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psyf
Desulfovibrio mangrovi
Pathway
psyf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psyf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N1030_12950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psyf03019
]
N1030_12950
03009 Ribosome biogenesis [BR:
psyf03009
]
N1030_12950
Enzymes [BR:
psyf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N1030_12950
Messenger RNA biogenesis [BR:
psyf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N1030_12950
Ribosome biogenesis [BR:
psyf03009
]
Prokaryotic type
rRNA helicases
N1030_12950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
UZP66510
LinkDB
All DBs
Position
complement(2870047..2871807)
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AA seq
586 aa
AA seq
DB search
MTDRPEDVQGSDSRVEDTAIEAHAEAASDVASGVQPAADLDPAARIAAEITEIEEPEDAL
PPVTLEELPPAMRTACEKAGWRSIMPVQSRSIPYQLAGRDIMVQSRTGSGKTGAYLLPAI
ERLDASKPHVQMLVLVPTRELALQVEHEAKTLFADNGLRTCAVYGGVGFGKQVDALRDGA
HVVVGTPGRILDHLLRRTMDLNQVRVLVFDEADRMLSIGFYPDMREIKRYLPKRRSTFLL
SATYPPQIIQLAGEFMHNPCMLSLSHKQVHVADTPHCYYSAKPMEKDRVLVRVLEVINPA
SAIIFCNTKANVHFVTAVLQGFGYDVDELSADLSQSKREKVLEKLREGKVRFLVATDVAA
RGIDIPQLSHVILYEPPEDRESYIHRAGRTGRAGASGEVISLVDIMQKLELERIAKHYKI
QMEHRATPTDEDLAAVVGQRMTAMLESRLRGKTALERERMKRFAPMLKSLLMDEEELPLV
AQLLDELYQATLHVPLQMPEPQAPAAHGGSQSSRGGRSRKPGGRKGGQRGGYSGDQQDGQ
PSGSGAAPAEGQDKAVSGSGEGEGEGRRKRTGRSRRRRKPSAPRQD
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccgtcccgaagacgtgcagggttccgactctcgcgttgaagataccgcaatc
gaggcgcatgccgaggcagcgtccgacgtggcttcaggcgtacagcccgctgccgatctt
gatcccgccgcgcgcattgccgcagaaattaccgaaatagaagagccggaagacgcactg
ccgcccgtgacgctggaggaactgcctccggccatgcgtaccgcctgcgagaaggcaggc
tggcgcagcatcatgccggtgcagtcgcgctccattccctatcagctcgcaggccgcgac
atcatggtgcagtcgcgcaccggcagcggcaagaccggtgcctacctgctgcccgccatt
gagcggctggacgcctccaagccccatgtgcagatgcttgtgctggtgcccacccgtgaa
cttgccctgcaggtggagcatgaagccaagacgctgtttgccgataacggcctgcgtacc
tgcgccgtgtacggcggtgtgggcttcggcaagcaggtggatgccctgcgcgatggtgct
catgtggttgtgggcacgcccggacgtattctcgaccacctgctccgtcgcaccatggac
ctgaatcaggtgcgcgtgctggtctttgacgaagcggaccgcatgctttccatcggtttt
tatcccgatatgcgcgagatcaagcgctatctgcccaagcggcgctccaccttcctgctt
tccgccacctatccgccccagatcatccagctggcaggcgagttcatgcacaatccctgc
atgctcagcctgagccacaagcaggtgcacgtggcggatactccgcactgttactacagc
gcaaagcccatggaaaaggaccgtgtgcttgtgcgggtgctggaagtcatcaaccctgct
tcggccatcatcttctgcaacaccaaggcgaacgtacacttcgtcaccgccgtgctgcag
ggattcggctacgacgtggacgagctttccgccgatctttcacagagcaagcgcgaaaag
gttctggaaaagctgcgcgaaggcaaggtgcgcttcctcgtggctacggacgttgcggcg
cgcggtatcgatattccgcagctttcgcacgtcattctgtacgaaccgccggaagaccgt
gaatcctacattcaccgcgccggcagaacgggcagggcgggtgcctccggcgaagtcatc
tcgctggtggacatcatgcagaagctggagcttgagcgtattgccaagcactacaagatt
cagatggagcatcgcgccacgcccacggacgaagaccttgccgccgttgtggggcagcgt
atgaccgccatgctggaatcccgcctgcgcggcaagaccgcccttgaaagggaacgcatg
aagcgctttgcgcccatgctgaagagcctgctgatggatgaagaggaacttccgctggtg
gcccagttgctggacgaactctatcaggccactctgcatgtcccgttgcagatgcccgag
ccgcaggctccggcagcgcatggcggctcgcagtcgtcccgtggaggacgcagtcgtaag
ccgggcggacgaaagggcggccagagaggcggctactccggtgatcagcaggatggccag
ccatcaggctcgggtgcggctcctgcagaggggcaggacaaggccgtatccggctcagga
gagggggaaggggaaggcaggcgtaaacgcaccggccgttcccgcagacgcaggaagcct
tcggctccgcgtcaggattaa
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