Desulfovibrio mangrovi: N1030_15010
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Entry
N1030_15010 CDS
T08614
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psyf
Desulfovibrio mangrovi
Pathway
psyf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psyf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N1030_15010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psyf03019
]
N1030_15010
03009 Ribosome biogenesis [BR:
psyf03009
]
N1030_15010
Enzymes [BR:
psyf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N1030_15010
Messenger RNA biogenesis [BR:
psyf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N1030_15010
Ribosome biogenesis [BR:
psyf03009
]
Prokaryotic type
rRNA helicases
N1030_15010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
UZP66902
LinkDB
All DBs
Position
3351322..3352920
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AA seq
532 aa
AA seq
DB search
MEGFSFEGVELSQEVLKSIEDMGFEEASPIQALAIPPILQGKDIIGQAQTGTGKTAAFGI
PILERINPRDRDVQAIVLCPTRELAIQVSEEISNLAKRMRGVSVLPVYGGQPIDRQFKAL
KRGAQVLVGTPGRVMDHMERGTIALDKVLMAVLDEADEMLDMGFRDDIEFILEKVPSTVQ
TVFFSATMPPEILQLAKRFLKEPEFLKVTQKVLTVPSIEQIYYEVRPFQKMDALCRVLDV
YNPKLTVVFCSTKRGVDELTANLQARGYQADGLHGNLNQTQRDRVMNRFRKGGIEILVAT
DVAARGIDVENVEAVVNFDIPNDVEYYVHRIGRTGRAGRTGRAFTFVSPKEFWKLRDIKR
YTKARIVQHQIPSIEEVETAKSGQLLAEIRSQIQTGNLERYISTVENFIESEFNGDLTTM
EMAAALLRIMMKRDLGDAVPDETGGFGDTGAQVGMVRLFMNVGRKMRIGARDIVGAIAGE
TGLPGKMIGNIDIYDRFTFVEVPQDYAQEVLGVMNGNQIRGYRLFVEPASRK
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atggaaggcttttcgtttgaaggtgtggaactgtcgcaggaagtgctcaagtccatcgag
gacatggggtttgaagaagcatctcccattcaggctctggctatcccgcccatcctgcag
ggcaaggacataatcggacaggctcagaccggtaccggcaagaccgccgcattcggtatt
cccattcttgagcgcatcaatccccgtgatcgcgacgtgcaggctattgtgctgtgcccc
acccgtgagctggccattcaggtatccgaagaaatttccaaccttgccaagcgcatgcgc
ggcgtgagcgtgctgcccgtatacggcggccagcccatcgaccgtcagttcaaggcgctc
aagcgtggtgcgcaggttctggtgggcacgcccggccgtgtcatggaccacatggaacgc
ggcaccatcgcgctggacaaggtgctcatggccgtgctggacgaggcggacgaaatgctc
gacatgggcttccgcgacgacatcgagttcatccttgaaaaggtgccctcaaccgttcag
accgtatttttctccgccaccatgccgccggaaatcctgcagctggccaagcgtttcctc
aaggagcccgagttcctcaaggtgacccagaaggtgctcaccgttcccagcattgagcag
atttactacgaggtgcgtcccttccagaagatggatgccctgtgccgcgtgctggacgtg
tacaaccccaagctgaccgtggtcttctgttccaccaagcgcggcgttgacgagctgacc
gccaacctgcaggcccgcggctatcaggccgacggtctgcacggcaacctgaaccagacc
cagcgcgaccgcgtcatgaaccgcttccgcaagggcggcatcgaaattctcgtggccacg
gacgtggctgcacgcggtatcgacgtggaaaacgtggaggccgtggtcaactttgatatt
cccaacgacgtggaatactacgtgcaccgcatcggccgtacgggccgtgctggccgcacc
ggccgcgccttcactttcgtttcccccaaggaattctggaagctgcgcgacatcaagcgc
tacaccaaggcgcgcatcgtccagcatcagattccttccatcgaggaagtggaaaccgcc
aagtccggccagctgcttgccgaaatccgttcgcagatccagaccggcaaccttgagcgt
tacatctccaccgtggagaacttcatcgagagcgaattcaacggcgatctcaccaccatg
gagatggctgccgccctgctgcgcatcatgatgaagcgcgacctcggcgatgccgtgccg
gacgaaaccggtggcttcggagataccggtgctcaggtggggatggtgcgcctgttcatg
aacgtgggccgcaagatgcgtatcggcgcacgcgacatcgtgggtgccattgccggcgaa
accggcctgcccggcaagatgatcggcaacatcgacatctatgaccgcttcacatttgtg
gaagtgccgcaggattacgcacaggaagtgctcggcgtcatgaacggcaaccagattcgc
ggctaccgcctcttcgtggagcccgccagccgcaagtaa
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