Desulfovibrio mangrovi: N1030_17120
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Entry
N1030_17120 CDS
T08614
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
psyf
Desulfovibrio mangrovi
Pathway
psyf00470
D-Amino acid metabolism
psyf00550
Peptidoglycan biosynthesis
psyf01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
psyf00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
N1030_17120 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
N1030_17120 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
psyf01011
]
N1030_17120 (murD)
Enzymes [BR:
psyf01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
N1030_17120 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
psyf01011
]
Precursor biosynthesis
Amino acid ligase
N1030_17120 (murD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
MurD-like_N
Mur_ligase_C
AlaDh_PNT_C
FAD_binding_3
Pyr_redox
TrkA_N
2-Hacid_dh_C
Pyr_redox_2
ADH_zinc_N
3HCDH_N
Shikimate_DH
NAD_binding_8
XdhC_C
ApbA
NAD_binding_2
NAD_binding_7
UDPG_MGDP_dh_N
Motif
Other DBs
NCBI-ProteinID:
UZP67294
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Position
3833557..3834855
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AA seq
432 aa
AA seq
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MKISCQQSPVTPGMKAVVVGVGSTGMAAAELLHALGADVRIVDRSAEKVSPAFREVIDRF
GFETAFGDHSAEQFAGAELVVPSPGVPVLKLAPYLPETARVMAETELAWHCVQHIPVLSV
TGTNGKTTTVRLCAKMLEDAGKKVFLGGNIGTPLSRFVLEGGEADVLVLELSSFQLQTCS
ALRPKVGVLTNITVDHLDYHKDMDEYTDAKMRMFARQTFEDKAIFGPGLEDLPYRYDVKA
EIWFFDDSARFPEALLKGRHNRLNMEAAFLACSVFGVTVESATATLREFTADEHTLETVG
SAKGVIFVNDTKATTVDAVRAALETFETPILLLAGGVYKGGDLTTLRELIGTKCKAVGLY
GGSREKFEQAWGGCAPISYDSTMEEAARRLMGVAAEGDVMLLAPATSSFDQYANYKARGE
DFRRIQALLAGE
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcagctgtcagcagagccccgtaactcccggcatgaaggccgtggttgtgggc
gtgggaagcaccggcatggctgccgcggagttgctgcatgcgcttggcgcggatgtgcgc
atcgtggaccgcagtgccgaaaaggtttctccggcgtttcgtgaagttatcgatcggttt
ggttttgaaaccgcctttggcgaccacagtgcggaacagtttgcgggtgcggaacttgtc
gttcccagccccggcgttcccgtgctcaagctggccccgtatctgcccgaaacggcgcgg
gtgatggcggaaaccgaactggcatggcactgcgtgcagcatattcccgtgttgtccgtg
acaggcaccaacggcaagaccaccaccgtgcgtctgtgcgcgaagatgctggaagatgcc
ggaaagaaggtttttctcggcggaaacatcggtacccctctcagccgcttcgtgctggaa
ggtggcgaggcagacgtgctggtgctggagctttccagcttccagttgcagacctgttcc
gctctgcgtcccaaggttggtgtgctgaccaatatcactgtggaccatctcgactaccac
aaggatatggacgagtacacggacgccaagatgcgcatgtttgcccgtcagaccttcgag
gataaggccatcttcggtcccggtcttgaagacctgccgtatcgctacgacgtgaaggcg
gaaatctggttcttcgatgattccgcacgctttccggaagccctgctcaaggggcgtcac
aaccgcctgaatatggaagcggcctttctggcctgttccgttttcggcgtgaccgtggag
agcgctacggcaacgctgcgggagttcaccgcggacgaacatacgttggaaaccgttggg
tccgccaagggcgtgatcttcgtcaacgataccaaggcaaccaccgtggatgccgtacgt
gccgcgctggaaacttttgaaacgcccatcctgctcttggcgggcggcgtttacaagggc
ggagacctcaccactctgcgtgagctgatcggcaccaagtgcaaggcagtggggctctac
ggcggcagccgcgaaaagtttgaacaggcatggggcggatgcgcacccatttcctacgac
agcaccatggaagaagccgcaagaaggctcatgggtgtggccgccgagggtgacgtgatg
ctgcttgcaccggccacctccagctttgaccagtatgcgaattacaaagcgcgcggagag
gacttccgtcgcattcaggccctgttggcaggagaatag
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