Desulfovibrio mangrovi: N1030_17215
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Entry
N1030_17215 CDS
T08614
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
psyf
Desulfovibrio mangrovi
Pathway
psyf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psyf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N1030_17215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psyf03019
]
N1030_17215
Messenger RNA biogenesis [BR:
psyf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
N1030_17215
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
UZP67313
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Position
complement(3853054..3854712)
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AA seq
552 aa
AA seq
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MPDQQEFLTLTPLGGYGEIGMNCTIWSTPTTSVVVDCGLMFPDDYHLGIDVVIPQFDHIL
RQKEKVRGVVLTHGHEDHIGALPWLMPWLHVPIYGSRFTLALVEHKLREANLLDRTELIV
VKPGQRLALGDMVFNFFPVCHSIIEGFALGVETPVGRVVHTGDFKLDPNPIDGHSTDLDA
FRRFSDEGVQLLLSDSTNIERDGHSLGEREIRDTFDGIFRDAKGRVVVTLFSSHIQRIQE
VFDIAAKYGRKVAVSGRSLLNNIDIARDLGFMRVPSGVYMDPQDMPALPDNEIVLLVTGS
QGEPLSALSRITRGEHRSLSIKEGDTVIMSSRFIPGNARAITRLINDMYRLGAEVYYENF
RNIHASGHAYREELRIMLETVRPRFFVPVHGEYRHLVKHCRLAHECGIPADHTIILEDGD
PVTLLPEGIRKEPRINLETVLVDGKGVGDVGSSVLKERQILGGEGMVVVFLVLDEQIWEI
LHGPDIVSKGFIFEAHYNHVLEDAKCIVLDILENMSPGDLEKLKDRIRSTLRRFFRKVLE
RDPVVLPVITMV
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgccggaccagcaagaattcctgacgctgaccccccttgggggctacggcgaaatcggc
atgaactgcaccatctggtccacccccacgacctcggtcgtggtggactgcgggctcatg
tttcctgacgactaccacctcggcatcgacgtggtcattccccagttcgaccatattctc
cgtcagaaggagaaagtgcgcggcgttgtgctcacgcacggacacgaagatcacataggc
gcgctgccatggctcatgccctggctgcacgtgcccatctacggttcccgcttcacgctc
gcgctggtggaacacaagctgcgcgaagccaatctgctggatcgcaccgaactgatcgtt
gtgaaacctggacagcgtcttgccttgggcgacatggtcttcaacttcttccccgtgtgc
cactccatcattgaaggtttcgctctcggtgtggaaacgcccgtagggcgcgtggtgcat
accggcgacttcaagctggaccccaaccccattgacggccacagcaccgatctggacgcc
ttccgccgtttttccgacgagggtgtgcagctcctgctttccgactccaccaacattgag
cgggatggccattcgcttggcgaacgcgagatccgcgacacctttgacggcatcttccgt
gacgccaagggacgagtggttgtcacgctgttctcaagccatatccagcgcattcaggaa
gtgttcgacatcgccgccaagtacggccgcaaggtggccgtttccggccgcagcctgctg
aacaatatagacatcgcccgcgatctcggcttcatgcgcgtgccttccggcgtctacatg
gacccgcaggacatgcccgccctgccggacaacgagatcgtcctgctggtaacaggctca
cagggcgagccgctgtcagcactttcccgcatcacccgcggcgaacaccgctccctctcc
atcaaggaaggggatacggtcatcatgtcgtcacggttcatccccggcaacgcgcgcgcc
atcacccggctcatcaacgacatgtaccggctgggggcagaggtctattacgagaatttc
cgcaacatccacgcttcgggccacgcctaccgtgaagaacttcgcatcatgctggaaacc
gtgcgcccacgcttcttcgtaccggtgcacggcgagtatcgccatctggtcaagcactgc
cgccttgcccacgaatgcggcattcccgccgaccacaccatcattctggaagacggcgat
cccgtcacactgctgccggaaggcatccgcaaggagccgcgcatcaatctggaaaccgtg
ctggtagacggcaagggcgtgggcgacgtgggttcctccgtactcaaggaacgtcagata
ctgggcggagaaggcatggtggtagtcttcctcgtgctggatgagcagatttgggaaatc
ctgcacgggccggacatcgtgtccaaaggcttcatcttcgaggcccattacaatcacgtg
ctggaagacgccaagtgcatcgtgctggacattctggaaaacatgagcccgggcgatctg
gaaaagctgaaggaccgcatccgctccaccctgcgccgcttcttccgcaaggtgctggaa
cgtgaccccgtagtgctgcccgtcatcaccatggtctag
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