Desulfovibrio mangrovi: N1030_17415
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Entry
N1030_17415 CDS
T08614
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
psyf
Desulfovibrio mangrovi
Pathway
psyf03410
Base excision repair
psyf03430
Mismatch repair
psyf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psyf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
N1030_17415 (recJ)
03430 Mismatch repair
N1030_17415 (recJ)
03440 Homologous recombination
N1030_17415 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psyf03400
]
N1030_17415 (recJ)
DNA repair and recombination proteins [BR:
psyf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
N1030_17415 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
N1030_17415 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
N1030_17415 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
YqbF_HeH
Motif
Other DBs
NCBI-ProteinID:
UZP67352
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Position
3888038..3889744
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AA seq
568 aa
AA seq
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MSKQWISRSADPAPQGLSAWAEQLEISDFLAELLWHRGLQSREDMQQYLSPFLRQLAPLC
QWPGLEEAADVLAQGLAEGRQLAVWGDYDVDGVTSTALVKSFLAGHGIDALHHLPNRMTE
GYGMNVAGVEALFERGVRMLLSVDCGISDFAPVARARELGMLVVVSDHHLPGEKLPDAHA
ICNPRLRECPCPALAGVGVAFFLMCALNARLEKQTGIRQDVRPLLDLVALGTIADVVDLA
GQNRILVKNGLLVLAEGKRIGMAALKEVSGYAPGAAVGAGQVAFGLAPRINAAGRMGRAG
LALDLLLSQDPEEARRLAASLDGMNEERKNEEERIQEAAFNQAESQLNRNALVLYGEDWH
SGVIGIVASRVVEAHYRPTVILCREGDIIKGSARSVSEFHLHEGLTRCADLFIGFGGHKL
AAGMSFAPDKLEAFRSRFTDIVEQSIGTQPLTAHLRVDGDMGFDLASDFTLLKELELLQP
FGMGNSEPVFASPPLLVKSRRVFARKHLKLELFDGASGITLHAKAWRMAEAMPPMIEGRN
IRLAFSPRIDRYNGGAEVDLRIKDWKLM
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
ttgtccaaacagtggatttcccgttcggcagaccctgcaccgcagggcctttctgcctgg
gcggaacaactggaaatttcggattttctggcggaacttctgtggcatcgcggcctgcag
agccgtgaggatatgcagcagtacctcagcccctttctgcgtcagcttgctccgctgtgc
caatggcccggtctggaggaggcggcggacgtgcttgcacaggggctggcggaaggtcgc
caactggccgtgtggggcgattatgacgtggatggcgtgacctccacggctttggtgaag
agctttctggcagggcacgggattgatgcgctgcatcatctgcccaatcgtatgaccgaa
ggttacggcatgaacgtggcgggcgtggaagccctgtttgagcggggggtgcgcatgctc
ctttccgttgactgcggcatttccgatttcgctcccgtggcgcgtgcccgagagttgggc
atgctggtggtggtttccgaccaccatctccccggcgagaaactgcccgatgcccacgcc
atctgcaatccccgtttgcgtgaatgtccgtgtccggccttggccggcgtgggcgtggca
tttttcctcatgtgcgcattgaacgcacggcttgagaagcaaaccggcatccggcaggac
gtgcgtccgttgcttgaccttgtggccttgggcaccatcgccgacgtggtggatctggca
ggccagaaccgcattctggtcaagaacggcctgctggtgctggcggaaggaaagcgcatc
ggcatggctgcgctcaaggaagtttccggctatgcgccgggggcggccgtgggggcaggg
caggtcgccttcggccttgcgccgcgcatcaacgcagccggacgcatgggcagggctggt
ttggcgcttgatcttctgctctcgcaggatcccgaggaggccagacggcttgcggcctcg
ctggacggcatgaacgaggaacgcaagaacgaggaagaacgcattcaggaagctgcgttc
aatcaggcggaatcacagctcaaccgcaacgcgttagtgctgtatggtgaggactggcac
tccggcgtcataggcatcgtcgcctcccgcgtggtggaagcccactacaggcccacggtc
atcctgtgccgtgagggagatatcatcaaggggtcggcccgttcggtcagcgaatttcat
ctgcacgaggggctcacccgctgtgccgatctgttcattggcttcggcggacacaagctc
gcggcgggcatgtcctttgcgcccgacaagctggaggcgttcagatcccgtttcacggat
atcgtcgagcagagtatcggcacccagccgcttacggcccaccttcgtgtggacggagac
atgggctttgatctggcttcggactttaccctgctcaaggaacttgaactgctgcagccc
ttcggcatggggaacagtgagcccgtgttcgcctcgccgcccctgttggtcaagtcgcgc
cgcgtctttgccagaaagcacctgaagctggaactctttgacggggcaagcggcataacc
ctgcacgccaaggcgtggagaatggctgaagccatgccgcccatgatcgaaggcaggaat
attcgtctcgctttttctccccgcatagaccgctacaacggcggagccgaggtggacttg
cgcatcaaggattggaaattgatgtga
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