Psychrobacter sp. P11G5: AK825_01660
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Entry
AK825_01660 CDS
T04411
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psyg
Psychrobacter sp. P11G5
Pathway
psyg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psyg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AK825_01660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psyg03019
]
AK825_01660
03009 Ribosome biogenesis [BR:
psyg03009
]
AK825_01660
Enzymes [BR:
psyg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AK825_01660
Messenger RNA biogenesis [BR:
psyg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AK825_01660
Ribosome biogenesis [BR:
psyg03009
]
Prokaryotic type
rRNA processing factors
AK825_01660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AMN66587
LinkDB
All DBs
Position
complement(384339..388610)
Genome browser
AA seq
1423 aa
AA seq
DB search
MKRILINATQNEEIRVALCKGNHLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEY
GSQRQGFLPIREISAEYLSGNPRDENIKKLIKEGDELIVQVEKEERGNKGAALSTYVSLA
GRYLVLMPNNPRGGGISRQISGKLREDMKRMLSNLDLPKGMSVIIRTAGIGKTQEDLQHD
LNHLLNIWQAIQEQNQKYPSPRLVHQEAGVVTRAVRDYLRDDIAEIWIDNENAYIEAAGF
IDAVMPTQADKLRKYTDYEPMFARFNIEKQIETAYQREVRLPSGGSIVIDQTEALVSIDI
NSAKSTKGSDVAETAYHTNLEAADEIARQLRLRDMGGLIVIDFIDMNDNKHQKEVEKRLV
DATKYDRARVQFGEISKFGLMEMSRQRLRPSLEESTGYICPRCHGNGMIRDLRSLSLSIM
RQIEQIALKERQGEVQAEVPTDIAAFLLNEKRDSLVYLEQDSGTRITILPHAHLESPNFK
LHFNRDGFAPTSYERITDTQQQEHSDLGYDVDWQTAEKERPEQQPTRQPRKTADNQGSQT
DDRSNNQNSGRSQPAASGQSNNQNSSSSTETKSAASHSNNRNQNNNNSQSNNESTQVSST
RAATNNVPLKNQTTPTSVATQSVPAAQPKAVAWLSNLFAQAPQAQTANSISSRDAAEAIE
ALVNTGAQSLGSFGQVDNTALDNNQRPSSTQDSHQQNVRPQDDNHAQAVTQQSRGSADND
SDNGDDNKDSNGDDRRKRKPRKSRSSKPRQRKEQRDDNDSVDNSTDSTNDSTQSDTQNKR
EHDNKRGNDRNRNRQDNRQDNRQHNRNDSESQDDTATEEQSRTKRKPHSQRNSRGKLERG
ETLTADNNAKQSNQQSATNGKSQASARRNQDPNEVILQVNEAPTKLKASEVVHLSLDDSK
SGQTAHKPTDMQEAEPNVAVDDKDLTATPRNDDKSKETVTKKVESTDTDTVKTESTERLA
DEKQQSNEHKAKPTEDNKSSVEQSEKVSDAKTIATESVKESAQASETAKADTTKASVDAQ
QSDDNSEVEATSSTKSSTANNSNADTNSDVNSNSEVDNSKTKNGAVLTLTHDALFATRYV
AAQKFGQASNDPRVVRRQQSAPVAESDAKASTVASTVPTTIRGTVGEFIHATLADAQSRL
ADNGVISCFIDAIEAHTQQAKPAAVEVGDVDSVNDKTFDFSNYGYQPLDADYLTRFDAMT
QAVSQFAAAQGKTEVAPRAIGKRASNDPRGQHPDYHADEPKQATLNVPDESLVEPKSDTQ
SQEIVEINAAETSEMAETVNDAPSETAETAETAETENEAIQADNGQIDAHETEAAALTSE
VQADDISTESEQLLKADQMLEENKAVELTDSIKEDSQAGKSKTTIASYKNMIESVAEQLL
PQTGMFNLTTPKVPKARSRKPKTDHVKPTQAEKSENDNSDSES
NT seq
4272 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcattctgattaacgccactcaaaacgaagaaattcgtgtcgccttatgtaaa
ggcaaccatctttacgatttcgatttagaaaaccgtacccgcgagcaaaaaaaatccaac
atttataaaggtcatgtgacccgtgtcgagccgtcgcttgaagcagtattcgttgaatac
ggttcacagcgtcaagggtttttgcctattcgtgagatttctgccgaataccttagcggc
aatccacgtgatgaaaacatcaaaaaacttatcaaagaaggcgatgagctaatagtccaa
gtcgaaaaagaagagcgcggcaataaaggcgctgccctatcgacttatgtatcattggct
ggtcgctatcttgtattgatgccaaataaccctcgtggtggtggtatctcacgtcaaatc
tctggcaaactacgcgaagatatgaagcgtatgctgagcaatcttgatttacctaaaggc
atgagtgttatcattcgtactgcaggtattggcaagacccaggaagatttgcaacacgat
ctcaaccatttgcttaacatctggcaagctatccaagaacaaaaccaaaagtacccttca
ccgcgcttagttcatcaagaagcaggcgttgtcacacgtgcagtacgtgattatctacgt
gatgatatcgctgagatttggatcgataacgaaaacgcttacattgaagcggcaggattt
attgatgcagtcatgccaacacaagcagacaaactccgtaaatatacggactacgagcct
atgtttgcgcgttttaatattgaaaagcagattgagacagcctatcagcgtgaagtacgt
ttgccatctggcggctctattgtcatcgaccaaactgaggccttagtttcaattgacatt
aactccgctaagtctactaaaggttcagacgtcgctgagaccgcgtatcataccaattta
gaagcagccgatgagattgcgcgtcagttacgcctacgtgatatgggtggcttgattgtc
attgattttattgacatgaatgacaataagcatcaaaaagaagtcgaaaagcgtctagtt
gatgcgaccaaatatgaccgtgctcgtgtccaatttggtgagatatccaaatttggtttg
atggagatgagtcgtcaacgtctgcgcccatcattagaagagtctaccggttacatctgc
ccacgttgccacggcaatggtatgattcgtgatctgcgctcactatcgctatctatcatg
cgtcaaattgagcaaatcgctcttaaagagcgtcaaggcgaagtgcaagcggaagtacct
actgatatcgctgcgttcttattgaatgaaaaacgcgacagcttggtttatctcgaacaa
gacagcggcacacgtattactatcctgccgcatgctcatctagaatcgcctaactttaaa
ctacacttcaaccgtgatggttttgcaccgacaagctatgagcgtattacagatactcag
caacaagagcatagcgaccttggttacgatgtcgattggcagactgcggaaaaagaacgt
cctgagcagcaacctactcgtcagccacgtaagacagctgacaatcaaggcagtcaaaca
gacgatcgctcaaacaatcaaaatagcggccgctcacagccagcagctagtggccagagt
aacaaccaaaactctagctcaagcactgaaacaaagagcgcagctagccatagtaataat
cgtaatcaaaataacaataatagccaaagcaacaatgaaagcacccaagtctcttcaacg
cgtgctgctacaaataacgttccgctaaaaaaccaaacgacccctacttctgtagccact
cagtctgtacctgctgcgcagccaaaagctgtcgcttggttatctaatctgtttgcccaa
gcgccacaagcacaaactgcaaatagtattagtagtcgtgatgcagcggaagctattgaa
gcgttagttaatactggtgcccagagcttaggttcgttcggtcaagttgataatacggca
ttggataataaccaacgtccatcatcaacgcaggatagtcatcagcaaaacgtacgccca
caagacgacaaccatgctcaagctgtaactcagcagtcaagaggcagtgctgacaatgac
agtgataatggcgacgataataaagacagcaatggcgacgacagaagaaagcgtaagcca
cgcaaatcaagatcatctaagccgcgtcaaagaaaagaacaacgcgatgacaatgatagt
gtagataacagcacagacagtacaaatgacagcactcagtctgatacacaaaataagcgt
gagcacgacaataaacgcggtaacgatcgtaatcgtaatcgccaagacaaccgtcaggac
aatcgccagcataatcggaatgatagcgaaagtcaggacgatactgccactgaagagcaa
tctcgtacgaagcgcaaaccacatagtcagcgtaactcacgtggtaagcttgaacgtggc
gagaccttaacagctgacaataatgcgaagcaaagcaatcaacaatcagctacgaacggt
aagtcgcaggcaagtgctcgacgcaaccaagatcctaacgaagtcatattacaggtcaac
gaagcgccgactaagcttaaagcatcagaagtggtacatctgtctttagatgatagcaag
tctggacaaacggcgcataaacctacggatatgcaagaagctgagcctaatgtagctgtc
gatgataaagacctaacggctacaccacgtaatgacgataagtcgaaagagacagtaacc
aaaaaggttgagagcacagataccgacacggttaaaaccgaatcgactgaacgcttagcc
gacgaaaaacaacagagtaacgagcacaaagcaaagccaactgaggacaataaatcatcg
gttgagcagagtgaaaaagtctctgatgctaaaacaatcgctacagaatcggtgaaagag
tcagcacaagcgtcagaaacggctaaagcagatacgacaaaagcgtcagtcgatgctcag
caatctgacgataatagtgaagttgaagcaactagcagcactaaaagtagcactgcaaat
aatagcaatgcagacactaatagtgatgtaaacagtaatagtgaggtagacaacagcaag
acaaagaatggcgctgtactcacgcttactcatgatgcattatttgctacacgttatgtg
gccgctcagaaattcgggcaagcaagcaatgatcctcgtgtagtacgtcgtcagcagtca
gcaccagtagctgagtcagatgctaaagcaagcactgtagcaagcaccgtaccgactact
attcgcggtactgttggtgagttcattcatgcgacgttagcagatgcacaaagccgctta
gcggataatggggtgattagttgcttcattgatgctattgaggcgcatactcagcaagcc
aaacctgctgctgttgaagttggtgacgttgatagtgttaatgataaaacttttgacttt
agcaactatggttatcagcctctagatgctgattacttgactcgctttgatgcgatgacc
caagcagtcagtcagtttgcagcagcgcaaggtaaaacagaggttgcaccacgtgctatt
ggcaagcgtgctagcaatgacccacgtggacagcatcctgattatcatgctgacgaacca
aagcaggcgacattgaacgttcctgatgagtcgcttgtggagccaaaatcagatactcaa
tctcaagagatagtagagattaatgctgctgagacgtctgaaatggctgagactgtcaac
gatgctccatctgaaactgctgaaactgctgaaactgctgaaactgagaatgaggctatt
caagctgacaatggtcaaattgatgctcatgaaactgaagcagcagcattgaccagtgag
gtacaagcagacgatatcagtactgaaagtgagcaattactaaaagctgatcaaatgcta
gaagaaaacaaggctgttgagcttactgactctatcaaagaggacagtcaagccggtaaa
tctaagacgactattgccagttataaaaatatgattgaaagtgtcgctgagcagctgctg
ccacaaactggcatgtttaatttgaccacgccaaaggttccaaaagcacgcagtcgtaaa
ccaaagactgaccacgtgaagccaacacaagctgagaaatcagaaaatgataattcagat
agcgaaagttaa
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