Psychrobacter sp. P11G5: AK825_12420
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Entry
AK825_12420 CDS
T04411
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psyg
Psychrobacter sp. P11G5
Pathway
psyg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psyg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AK825_12420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psyg03021
]
AK825_12420
03400 DNA repair and recombination proteins [BR:
psyg03400
]
AK825_12420
Enzymes [BR:
psyg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AK825_12420
Transcription machinery [BR:
psyg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AK825_12420
DNA repair and recombination proteins [BR:
psyg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AK825_12420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AMN68392
UniProt:
A0A127H1M4
LinkDB
All DBs
Position
complement(3042627..3046853)
Genome browser
AA seq
1408 aa
AA seq
DB search
MKDLLDIMQSPTASGNREFDSIQITLASPDVIKSWSHGEVKKPETINYRTFKPERDGLFC
AKIFGPVKDFECLCGKYKRRKFQGVICEKCGVEVTTAKVRRDRMGHIDLASPVAHIWFLK
SLPSRIGLLLDMTLRDIERVLYFESYIVTEPGLTSLEKYQLLDDEDYYKALEEFGDEFVA
KMGAEAVQDLLKDIDLDLEIDELREAIPQTGSETKLKKMSKRLKLLEAFRDSNNKPEWMV
MTILPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLELSAPDIIVRNEKRM
LQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVG
PTLRLHQCGLPKKMALELFKPFTYSKLLSHGMATTIKAAKKMVEREEPQVWDMLAMVIRE
HPVLLNRAPTLHRLGLQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLTLEAQL
ESRALMMSTNNILSPANGDPIIVPSQDVVLGLYYISRSSVNAKGEGMIFATVNEALRAIG
SNDLHVNAKIKVRVTETHIDEEGNETNKEVSLKETVAGRLLIWNIMPKGMAFDECNQEMT
KKNISRLINSCYRKMGAKGSVMFADQLMYLGFAQATLSGVSVGIDDMVIPPSKKQIIEVA
EAEVREIEDQFEQGFVTAGERYNKVVDIWSRTNDKVAKAMMDNLATDKVINAQGIEEEQK
SFNSIYIMSDSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIKANFREGLTVLQYFISTH
GARKGLADTALKTANSGYLTRRLVDVAQDLVITTDDCGTDVGLLMTPHIQGGEIIEKLGD
LVLGRVTARDVTYNDDDSKILVPAGTLIDEHWVNVLDENAIDDIWVRSVITCNVAHGVCS
QCYGRDLARGHKVNIGESVGVMAAQSIGEPGTQLTMRTFHVGGAASSASVDNSISVRNAG
QAHFENMKTVQHTDGHLVIVSRSAEIALTDELGRERERYKVPYGSSVLVKHEDQVEGGQT
IAKWDPHTHPIITEFAGTARFSEITDGMTATVKVDDATGMSSFEILATRDRSSTAKDLRP
AIILNTDEGKEVIYFLPAETIIRVSDGEKVAAGSILGRVPQATSGTKDITGGLPRVADLF
EARRPKDHAIMAEMTGVVSFGKETKGKNRFIITNEDGEVHEELIPKWRQINVFENETVAR
GEVIADGPQNPHDILRLKGQTALANYIVNEVQDVYRLQGVKINDKHIEVIIRQMLRKVEI
TDGGDSSHFKGDQAEYADIRALNAKLEAEDKFPVQYERQLLGITKASLATESFISAASFQ
ETTRVLTAAAVTGKVDELRGLKENVVVGRLIPAGTGLAYHKARKEKAEQKLLDKDINAAF
DMTASTDSKDFASFDEAFAQELNQDSQS
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagatttactcgatattatgcaaagccctaccgctagcggtaatcgtgagtttgat
agtattcaaattaccttagcgtcacctgatgttattaaatcatggtcgcatggtgaagtt
aaaaagcctgaaacgattaactatcgtaccttcaagcctgagcgtgacggtctgttctgt
gccaaaatctttggtccagttaaagattttgagtgcctgtgtggtaaatataagcgccgt
aaattccaaggcgtaatctgtgaaaaatgtggcgttgaagtcactaccgctaaagttcgt
cgtgatcgcatgggtcacattgacctagcgagtcctgttgcgcatatttggttcctaaag
tcattaccaagccgtattggtctattattagacatgactttgcgcgatattgaacgtgta
ttgtattttgaaagctatatcgttactgagccaggtttaactagcttagagaaatatcag
ctgcttgatgatgaagattattataaagcccttgaagaatttggcgatgaattcgtagcc
aagatgggtgctgaagccgtacaagatctattaaaagatattgatttagaccttgagatt
gacgagctacgcgaagctattccgcagacaggttctgagactaagcttaaaaagatgtct
aagcgtcttaaattattagaagcattccgtgattctaataataagcctgagtggatggta
atgaccatcttgccagtactaccaccagatttgcgcccactagtgccactagaaggcgga
cgttttgcgacctcagatctaaacgatttgtatcgccgcgtcattaaccgtaacaaccgt
ctaaagcgtctattagagctaagcgctcctgatattatcgtacgtaacgaaaagcgtatg
ttacaagaatcagttgatgctttattagataacggccgtcgcggtcgtgctattactggt
agtaacaagcgtccactcaaatctttggctgatatgatcaaaggtaagcaaggtcgtttc
cgtcaaaacttacttggtaaacgtgtcgactattctggtcgttcggttatcgtagtaggt
ccaacgctacgtctgcatcagtgtggtttgcctaagaaaatggcacttgagctattcaag
ccgtttacttattcaaaattattgtcacacggtatggcaaccacgattaaagcggccaaa
aaaatggtcgaacgtgaagagccacaagtgtgggatatgctggccatggttatccgtgag
catccagtactactaaaccgtgcaccaacgcttcaccgtttgggtctacaagcgttcgag
cctgtactaatcgagggtaaagctatccagctgcatccgctcgtttgtactgctttcaac
gctgactttgatggtgaccaaatggcagtacacgtgccattgacgttagaggcacaactc
gaatcacgtgcgctaatgatgtcaaccaacaacatcttgtcacctgctaacggtgatccg
attattgtaccgtcacaagatgtggtacttggtttgtattacatcagtcgctcatcagtg
aatgccaaaggcgagggcatgatttttgctaccgtcaatgaagcattacgtgccatcggt
tcaaatgatttgcatgtaaacgcaaagattaaagtgcgtgttactgagacacatatcgat
gaagaaggcaacgaaaccaacaaagaagttagtctaaaggaaactgttgctggtcgtctg
cttatctggaatatcatgccaaaaggtatggcgtttgatgagtgcaaccaagagatgact
aagaaaaacatctcacgtttgattaactcttgctatcgtaagatgggcgccaaaggtagt
gtcatgttcgctgaccaattaatgtacctagggttcgctcaagcgacactatctggtgta
tctgttggtatcgatgacatggtcattccaccaagcaaaaagcagattattgaagttgct
gaagccgaagttcgtgaaattgaagatcagtttgagcaaggttttgtgactgctggtgag
cgttataacaaagttgtcgatatctggtcacgtactaacgacaaagtcgctaaagcgatg
atggacaacttggctactgataaagtaatcaatgctcaaggtatcgaggaagagcaaaaa
tcttttaactcaatctatatcatgtcggattcgggtgctcgtggtagtgctgcacagatt
cgtcagcttgctggtatgcgtggtttgatggcaaagccggatggctcaattatcgagacg
ccgattaaagccaacttccgtgaaggcttaacggtacttcagtactttatctcaacgcat
ggtgcgcgtaaaggtctagcagataccgcattgaaaacggctaactcaggttatttgact
cgtcgtttggttgatgtcgcacaagatttagttattactactgatgactgtggtactgat
gtaggcttgctcatgacgccgcacatccaaggtggtgagatcattgaaaaacttggtgat
ctagtacttggacgtgttacagcgcgtgatgtcacgtacaatgatgatgattcaaaaatc
ttggttccagcgggtactttgatcgatgagcattgggttaatgtgcttgacgaaaatgca
atcgatgacatctgggtacgctcggtgattacttgtaacgtagcacatggtgtttgttca
cagtgctatggtcgtgaccttgctcgtggtcataaagtgaatatcggtgagtcagttggt
gtcatggcagcacagtctatcggtgagcctggtacacagcttacgatgcgtactttccac
gtgggcggggcagcaagctcagcatcagtggataatagcatctcagtccgtaatgctggt
caagcgcatttcgagaatatgaagacagttcagcatactgacggtcacttagttattgtt
tctcgttctgctgaaattgccttaactgatgagcttggtcgtgagcgtgagcgttataaa
gtaccttatggttcaagtgtattagtgaagcatgaagatcaggtcgaaggtggccagact
atcgctaaatgggatccgcatacgcatccaatcatcactgaatttgctggtacagcacgc
tttagtgaaattactgatggtatgacggcaactgttaaagttgatgacgcgactggtatg
agctcatttgagattcttgctactcgtgaccgttcaagtactgcaaaagacttacgtcct
gccattatcttgaatactgacgaaggcaaagaagtaatttacttcttacctgctgaaacg
atcattcgtgttagcgatggtgaaaaagtagcggcaggttcaatcttaggtcgtgtacca
caagctacttcaggtactaaagatattaccggtggtctaccacgtgttgctgatttattc
gaagcacgtcgtccaaaagatcatgccatcatggcagagatgactggtgtagtcagcttt
ggtaaagaaactaagggcaaaaatcgcttcattatcaccaatgaagatggtgaagtacat
gaagagctaatccctaaatggcgtcaaattaacgtctttgaaaatgagacagtagctcgt
ggtgaagttatcgctgatggtccacaaaacccacacgatatcttacgtctaaaaggccag
acagcacttgctaactatatcgttaacgaagtacaggatgtttatcgtctgcaaggtgtg
aagattaacgacaagcacattgaagttatcattcgccaaatgctacgcaaagttgagatt
actgatggtggtgattcaagtcacttcaaaggcgatcaagctgaatatgctgatatcaga
gcacttaacgcaaaactagaagcggaagataaattcccagtacagtatgagcgtcagcta
cttggtatcaccaaagccagtcttgcaacagaaagctttatctcagcagcgtcgttccag
gaaacgactcgtgtcctaactgctgctgccgttactggtaaggtagatgaactacgcggt
ctgaaagagaacgtcgttgttggtcgcctaattccagcgggtactggtcttgcttatcat
aaagctcgtaaagagaaagctgaacagaagctgcttgataaagacattaatgcagcgttt
gatatgactgctagcactgatagcaaagactttgccagtttcgatgaagccttcgcacaa
gagctcaaccaagacagtcagtcttaa
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