Psychrobacter sp. P11G5: AK825_13730
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Entry
AK825_13730 CDS
T04411
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
psyg
Psychrobacter sp. P11G5
Pathway
psyg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psyg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AK825_13730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psyg03019
]
AK825_13730
03016 Transfer RNA biogenesis [BR:
psyg03016
]
AK825_13730
Enzymes [BR:
psyg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AK825_13730
Messenger RNA biogenesis [BR:
psyg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AK825_13730
Transfer RNA biogenesis [BR:
psyg03016
]
Prokaryotic type
tRNA degradation factors
AK825_13730
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
DUF8139
Borrelia_orfA
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AMN68609
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All DBs
Position
3348677..3350944
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AA seq
755 aa
AA seq
DB search
MSWNDPNASSEAQKYDNPIPSRELILHTIAEHGEATHQQLAKAFDINDPDQFDALGNRLK
AMARDGQVNREGRPYRFRTVTQQDVVTGTVSAHPKGFGFVVLADMPDLFLHEKQMRWVFN
GDTVNAIGTSTDNRGRTEGRIVDVTERHQNHFIGTLARDEDGYCVELGSPNNHQPITVTE
DNIQELGAKKGDPVKVDVIDWPNQHEFATGKITEVLSDDNDRELIIETTLLNYDIPSEFS
EAALKQANDYREPSKKDLKGRTDLRDLPLVTIDGEDARDFDDAVFAEKRSGGNYRVLVAI
ADVSHYVTPNSPLDQDAYERGTSVYFPHRVIPMLPEVLSNGLCSLNPSVDRLCMVADIKI
SRAGKVTGYEFYPGVMHSQARLTYNQVNDYFANPKDDSIPKSLTDNKDVKKSVDTLHQLY
DLLIKKREERHAMEFETVETYIKFNEKGGIAAILPRTRGDAHKLIEECMLLANTCAANFA
LKNELPVLYRNHDKPDGEKSMRVHEYAKNFGLSFPEESPTQADYQRIIEATKDRPDAVSI
HSMLLRSMMQANYAPDNIGHFGLAYDEYSHFTSPIRRYPDLMLHRAIKAKVTNSQHPVMD
FSLDGAGTQTSDTERRAEKASRFVESWLKCHYMKDHVGEEFDGVVTTVTSFGLFVTLTDL
YIDGLVHISNVGDDFFVYDEQQQQLIGKDKGTLFGLGDLVKVKVAGVNMDLLQIDFDLKA
KLQSSEMNQTKKGQPKRSSAKKSSSRNSKGASKKS
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atgagttggaatgatccaaacgcctcaagcgaggcacaaaaatacgataatcctatccct
agtcgtgagctgatattacacacgatcgctgaacacggtgaagcgacacatcagcagctg
gcaaaagctttcgatatcaatgatcctgatcaatttgatgcgttgggtaatcgtctaaaa
gcaatggctcgtgatggccaagttaaccgcgaagggcgtccttatcgctttcgtacagtc
acgcagcaagatgttgtcactggtacagtatctgctcacccaaaaggttttggctttgtc
gtgttggcagatatgccagatttgttcctgcacgaaaagcaaatgcgttgggtgttcaac
ggtgatacggtcaatgctattggtacgtcgacagacaaccgtggtcgtactgagggccgt
attgttgatgtaaccgaacgtcatcaaaaccattttatcggtacgcttgctcgtgatgaa
gatggctactgtgttgagcttggcagtcctaacaatcatcagccgattacagtcaccgaa
gataacatacaagagttaggtgctaagaaaggcgatccggttaaagttgatgtcattgac
tggcctaatcagcatgagtttgctactggtaagatcaccgaagtacttagcgatgataat
gatcgtgagctgatcattgagacgactctacttaattacgatattccgtctgaatttagc
gaagcggcacttaagcaagctaacgactaccgagagcctagtaaaaaagacttaaagggt
cgtaccgacttacgtgatttgccgttagtaactattgatggtgaagatgcgcgtgacttt
gatgatgccgtgttcgctgaaaaacgctctggcggtaactatcgcgtactggtcgctatt
gctgatgttagccattatgtgacgccaaactctccacttgatcaagatgcttatgaacgt
ggtacttcagtttatttcccgcatcgcgtcatcccaatgttgcctgaagtactgtcgaac
ggcttgtgttcgcttaacccttcagttgatcgattatgtatggttgccgatatcaaaata
tcgcgtgctggcaaggtgacaggttacgaattctatcctggggtcatgcattcacaagca
cgtttaacttataaccaagtcaatgattattttgccaatccaaaagatgacagcattcca
aaatcattgacagataataaagatgtcaaaaaatctgtcgatacgctacatcagttatat
gacttgctcattaaaaagcgcgaagaacgtcatgcgatggaatttgaaactgttgagact
tatattaagtttaatgagaaaggcggtatcgcggctatcttgccacgtactcgtggcgat
gctcataagctcatcgaagagtgcatgttacttgccaatacctgtgcggcaaactttgca
ttgaaaaacgagctacctgtactatatcgtaatcacgataagcctgatggcgaaaaatca
atgcgtgttcatgaatacgcaaaaaactttggtttaagctttccagaagaaagcccaacg
caagcggattatcaacgcattattgaagccacgaaagatcgtcctgatgcggttagtatc
cacagcatgttactacgctcgatgatgcaggccaactacgcacctgataacatcggtcac
tttggtttggcatatgatgaatatagccatttcacttcaccgattcgccgctatcctgac
ttgatgctacatcgtgccattaaagcgaaagtaactaatagtcagcatcccgtcatggac
ttctctcttgatggtgcaggtacgcagacttcagataccgaacgccgtgctgaaaaggct
tcacgttttgtagaatcttggcttaaatgtcattacatgaaagatcatgtaggcgaagaa
tttgatggtgtcgttactacagtgactagctttggcctatttgtgacgttgactgatcta
tatatcgatggtctagtacatatctcaaatgtcggtgatgatttctttgtctatgatgaa
cagcagcagcagcttatcggcaaagacaaaggcactttgtttggacttggtgatttggtc
aaagtaaaagtcgctggtgtcaatatggatttgctccaaattgactttgatttaaaagcc
aagttgcaatctagtgagatgaatcaaacaaagaaaggccagcctaagagaagctcagct
aagaaaagcagtagccggaacagtaaaggtgctagcaaaaagagctaa
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