Psychrobacillus sp. AK 1817: D0S48_12885
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Entry
D0S48_12885 CDS
T06219
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
psyh
Psychrobacillus sp. AK 1817
Brite
KEGG Orthology (KO) [BR:
psyh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psyh03016
]
D0S48_12885
Enzymes [BR:
psyh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
D0S48_12885
Transfer RNA biogenesis [BR:
psyh03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
D0S48_12885
Prokaryotic type
tRNA splicing ligases
D0S48_12885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QEY23011
LinkDB
All DBs
Position
complement(2592857..2593948)
Genome browser
AA seq
363 aa
AA seq
DB search
MEIKGTHNNAVVYTDTIEDTAKSQVEQLCSLPFLQDTKIRMMPDLHAGKGCTVGTTMTIT
DKVVPNFVGVDLGCGMICAKLDTTKENVNFAKLDKTIKKNVPSGTRIRQKEHRNTIEIPF
EEVSAPINEQRARLSLGTLGGGNHFIELNEGEDGSIYLVIHSGSRNLGKQIAEHYQQVAS
DALGNSVSRDLAYVEGDNMKDYLYDLSIAQKYAAFNRKTMVDVICRGMNWSVQSEFDTIH
NYIDLDNMILRKGAISAQNGEIVIIPMNMRDGSLICRGKGNPEWNYSGPHGAGRLMSRSQ
ARKQVALEDFQASMEGIWSTSVVSSTVDESPFAYKAMKDILAHIDETVDVLEVIKPIYNY
KAH
NT seq
1092 nt
NT seq
+upstream
nt +downstream
nt
attgaaattaaagggacacataataatgcggtggtttatacggatacaatagaagacaca
gccaaatctcaggtagagcagctttgtagtctaccctttctccaagatactaagattaga
atgatgcccgatttacatgccggaaaaggttgcacagtgggcactactatgactattacc
gataaagtggttccaaactttgtaggcgtcgatttaggctgtggaatgatatgtgcaaag
ctcgatacaacgaaagaaaatgtgaattttgcaaagctcgataagactattaaaaaaaat
gtaccgagcggaactcgcattcgacaaaaagaacatcgaaatacaatagaaattcctttt
gaagaggtatctgctcctatcaatgagcaacgcgcacggctgagtcttggtacacttgga
ggaggcaaccactttatagaactcaatgaaggcgaagacggtagtatctatctagtgatt
cactctggaagcagaaacttaggaaagcaaattgctgagcattatcaacaagtagcttct
gatgctttaggtaatagcgtatcaagggaccttgcttatgtagagggagacaatatgaag
gattatttatacgatctttctattgcccagaagtacgcggcttttaaccgcaaaacaatg
gttgacgttatttgtagagggatgaattggagtgtccaatccgagtttgacaccattcat
aactatattgatttagacaacatgattttgcgtaagggagcaatatctgcacagaatggt
gaaatagttattattccaatgaatatgcgcgatggttcgcttatctgtcgtggaaaggga
aatcccgaatggaattattctggccctcatggagcaggtcgcctcatgagtaggtctcaa
gcgagaaaacaagtagctttggaggacttccaagcttctatggaaggaatttggagcacc
tctgtcgtttcaagcactgtagacgagtctccttttgcatataaggctatgaaggatatc
cttgcgcatattgatgaaaccgtagatgtattggaagttattaaaccgatttataactat
aaggcgcactga
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