Psychrobacillus sp. AK 1817: D0S48_13110
Help
Entry
D0S48_13110 CDS
T06219
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psyh
Psychrobacillus sp. AK 1817
Pathway
psyh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psyh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D0S48_13110 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psyh03021
]
D0S48_13110 (rpoC)
03400 DNA repair and recombination proteins [BR:
psyh03400
]
D0S48_13110 (rpoC)
Enzymes [BR:
psyh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D0S48_13110 (rpoC)
Transcription machinery [BR:
psyh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D0S48_13110 (rpoC)
DNA repair and recombination proteins [BR:
psyh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D0S48_13110 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QEY21531
LinkDB
All DBs
Position
2637648..2641250
Genome browser
AA seq
1200 aa
AA seq
DB search
MIDVNNFEYMKIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRSLEEVIYFASYVVIEPADTPLEKKQLLSEKEYRAYRDKFGSKFQAAMGAEAIKRLLQ
EIDLESETENLKEELKTAQGQRRTRAIKRLEVVESFRNSGNKPDWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MAIELFKPFVMKELVERGLAHNIKSAKRKIERMHPEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERKGATGEGSTFYGPEEVLIAYNTGHVHLHTRIAIA
ASSLKNPTFTEEQNKMLLLTTVGKVIFNEILPETFPYINEPTDYNLQIETPEKYFISTTT
DVKKHIESTDLVQPFKKKILGNIIAEVFKRFHITETSKMLDRMKSLGFKYSTKAGITIGI
SDIVVLPDKGEILEEAQGKVDKVMKQFRRGLITEEERYASVIGHWSRAKEVIQEKLMRSL
DNMNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDCGTDRGLLIGSLMEGTEVIEEFG
ERIVGRHTKKTIFHPETGKVMLERDGLITQDIARLIEEAGITQLTIRSAFTCNTKHGVCK
KCYGLNLATGDTVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF
EARNPKGQAVISEISGTVTEIDEIREGQKEITIQGNVETRKYLAPYNARLKVIVNDVIQR
GQVLTEGSVDPKELLKVKDVSTVQEYLLKEVQKVYRMQGVEIGDKHIEVMVRQMLRKVRV
IEAGETDLLPGSLLDIHQFAEANKEAVLQGKIPATCRPVILGITKASLETESFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMQRYRQIQITTNEADAEKETVNAE
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
ttgatagacgttaataattttgagtatatgaaaattggtttagcttcaccagataaaatc
cgttcatggtcttatggagaagtaaaaaaacctgaaacaattaactatcgtacactaaaa
cctgaaaaagatgggttattctgtgagcgtattttcggtcctacaaaagactgggaatgt
cattgtggtaaatacaaacgtgttcgctataaaggcgtagtttgtgatcgatgtggagta
gaggttacgcgttcgaaagtacgtcgtgagcgtatgggtcacattgaattggcagctcct
gtatcacatatttggtatttcaaaggtattccaagccgtatggggctgattttggatatg
tctccaagatcactagaggaagtaatttattttgcttcttacgttgtaattgaaccagcg
gatacacctcttgaaaagaaacaattactttctgaaaaagaataccgtgcataccgagat
aagtttggtagtaagttccaagctgctatgggtgcagaggctattaagcgtctattacaa
gagatagatctagaaagtgaaactgagaacttaaaagaagagttaaaaacagcacaaggt
caacgccgtacacgcgctattaaacgtttagaagtagtagaatctttccgtaactctggc
aacaagcctgattggatgatcttagatgtacttccggttattccaccagaattacgtcca
atggttcaattagacggcggacgctttgctacatctgatttaaatgatttataccgtcgt
gtaatcaaccgtaataaccgtttaaaacgtctattggacttaggtgctcctagcatcatt
gttcaaaacgaaaaacgtatgcttcaagaagcagttgatgcattgattgataatggtcgt
cgtggccgtccagtaacaggaccaggtaaccgtccattaaagtcactctcacatatgctt
aaagggaagcaaggtcgtttccgtcaaaacttacttggtaaacgtgtagactattctggt
cgttccgttatcgtagtaggaccaaacctaaaaatgtaccaatgtggtcttccaaaagaa
atggcaattgaattattcaaaccatttgttatgaaagaactagttgaacgtggtttggcg
cataacattaagagtgcaaaacgcaaaattgaacgtatgcatccagaagtttgggatgta
ttagaagatgtaatcaaggagcatccggttttactaaaccgcgcacctactcttcaccgt
ttaggtatccaagcgtttgaaccaacattagtagaaggtcgtgcaattcgtcttcacccc
cttgtatgtacagcatataacgctgactttgatggtgaccaaatggctgttcacgtacct
ttatcagcagaagctcaagcggaagcacgtctactaatgcttgctgcacaaaacattttg
aacccgaaagatggaaaaccagttgttacgccatctcaagatatggtactaggtaactat
tacttaacacttgagcgtaaaggcgcaacgggagaaggttctacattctacggtccagaa
gaagtgctaattgcatataatacaggtcatgtacatttgcatactcgtattgccatagct
gcatcttccttgaaaaatccaacatttacggaagaacaaaacaagatgttgttgttgact
actgtaggtaaagtaatcttcaacgaaatacttcctgaaacgttcccgtatattaacgaa
ccaacggattacaatttacaaatagaaacacctgaaaaatatttcatctctactacgaca
gacgtgaaaaaacatattgaatctacggatcttgttcaaccattcaagaagaaaatcctt
ggaaatatcatcgcagaagtatttaaacgtttccatattacagaaacatctaaaatgctt
gaccgtatgaaatcacttggatttaaatattcaactaaagctggtattacaatcggtatc
tctgatatcgtcgtacttccagataaaggtgaaattcttgaagaagcacaaggtaaagta
gataaagtaatgaaacaattccgtcgtggtctaataacagaggaagaacgttatgcaagc
gttattggacactggagtagagcgaaagaagttattcaagaaaaactgatgagatcactt
gataacatgaacccaatcttcatgatgagtgactctggggcccgtggtaacgcgtccaac
ttcactcagcttgcaggtatgcgtgggctgatggccaatccggctggtcgaattatcgaa
cttccgattaaatcatcgttccgtgaagggttaacagtacttgaatatttcatctcaacg
catggtgctcgtaaaggtcttgccgatacagctcttaaaacagccgattcaggttacctg
actcgtcgacttgttgacgtagctcaagatgtaatcgtacgtgaggatgactgtggaaca
gaccgtggcttactaataggctctcttatggaaggtacggaagtaattgaagagtttggc
gaacgtattgttggacgtcacacgaagaaaacaatcttccatccggaaacaggaaaagta
atgttagaaagagatggcttgattactcaagatatcgcacgtcttatcgaagaagctgga
attactcaattaactatccgctcagcatttacttgtaatacaaaacatggtgtatgtaaa
aaatgttacggcttgaacttagcaactggagatacggtagaagtaggggaagcggtaggt
attatcgcagctcagtctatcggagaacctggtacacagttaacgatgcgtacattccat
acaggtggggttgccggtgatgatattacacaaggtcttccacgtattcaagagattttt
gaagctcgtaatccaaaagggcaagcggttatttctgagatttctggtaccgttactgaa
attgacgaaattagagaaggacaaaaagaaattacaattcaaggtaatgtagaaacacgt
aaatatctagctccatacaatgcacgtctaaaagtaatagtaaatgacgttattcaacgt
ggtcaggtattaacggaaggttctgtagaccctaaagaattgttaaaagtaaaagatgtt
tctactgttcaagagtacttattaaaagaagtacaaaaagtttatcgtatgcaaggggta
gaaattggggataaacatatcgaagtaatggttcgccaaatgcttcgcaaagtgcgcgta
attgaagcaggagaaactgacttgctacctggttcacttttagatatccaccaatttgct
gaagcgaataaagaagcagttttacaaggtaaaatccctgcaacttgtcgcccagttatc
cttggtatcacaaaagcttctcttgaaacagaatcattcttatcagcggcatctttccaa
gaaacgactcgtgtcttaactgatgcagcgattaaaggaaaacgtgatgagctacttgga
ttgaaagaaaacgtaattattggtaaactagttcctgctggtactggtatgcaacgttac
cgtcaaattcaaataactacaaacgaagccgatgctgaaaaagaaacagtaaacgcagaa
taa
DBGET
integrated database retrieval system
