Psychrobacillus sp. AK 1817: D0S48_18185
Help
Entry
D0S48_18185 CDS
T06219
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
psyh
Psychrobacillus sp. AK 1817
Pathway
psyh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psyh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D0S48_18185 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psyh03019
]
D0S48_18185 (rnr)
03016 Transfer RNA biogenesis [BR:
psyh03016
]
D0S48_18185 (rnr)
Enzymes [BR:
psyh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
D0S48_18185 (rnr)
Messenger RNA biogenesis [BR:
psyh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D0S48_18185 (rnr)
Transfer RNA biogenesis [BR:
psyh03016
]
Prokaryotic type
tRNA degradation factors
D0S48_18185 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
CSD
OB_Dis3
DUF3592
Bet_v_1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QEY22430
UniProt:
A0A5J6PP35
LinkDB
All DBs
Position
3621071..3623383
Genome browser
AA seq
770 aa
AA seq
DB search
MENMKEQLLELMNSEEYKPMTTKELEDHFGLTEADDFKELVKTLVSMEDSGAVVRSRSNR
YGVPSRMNLIVGSFIGHAKGFGFVTPEEAGMDDIFIPPTEINGAVNGDKVLVRVSKESSG
DRREGTIIKITQRGISQVVGTFQDNKGFGFVIPDDKKVPMDVFVAKGDTLGAVDGHKVVV
EITDWPNERKSATGIVTKILGHKNDPGVDILSIIYKHGITIDFPKEVIDQAEAVPDQIAE
GDLEGRRDLRDEVIVTIDGADAKDLDDAVTVTKLPDGTYKLGVHIADVSHYVTEGSALDR
EAYDRGTSVYLTDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMIINGSGMVTSHEIFQSV
IRTTERMTYSDVYKILEEKDEALIERYKDLVPMFENMAELAAVLRKKREERGAIDFDFPE
AKILVDEDGWPTDVAIRERTVAEKLIEEFMLAANETVAEHFKWMDVPFIYRIHEDPKPEK
LQRFFGFLTNFGLVVKGTGNDIHPKALQEIIESIEGMPEEPVISTMLLRSLQQAKYYGEC
LGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYLVNGDVSSATINHWGAIIDDIAEHTSK
RERRAVDAERDTDALKKAQYMADKIGEEFEGIVSSVTNFGMFIELPNTIEGLVHVTNMTD
DYYRFDDRQMMMIGERSGKQFRIGDEVTVRVSAVKPEEAAVDFEVVGMKKSFGRSTRKES
PKVIHASKKGTGKDRKDKSQPGPKKGTNQKKKFYESVAKKSQKRKRPKKK
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atggagaatatgaaagaacaattactggagttaatgaactcagaagaatataaaccgatg
accaccaaggaattagaggaccatttcggactaaccgaggctgacgacttcaaggagcta
gtaaagacactagtttccatggaagacagcggagcggttgtacgctcaagatctaatcgt
tatggtgtcccatctcgcatgaatttaatcgtcgggagcttcatcggtcatgctaagggc
tttggatttgttacacccgaagaggctggaatggatgatatctttattccacctacggaa
attaacggggcggtaaacggtgacaaggtgctcgttcgtgtatcgaaagaatcatcagga
gaccgtagagaaggtacgatcattaaaatcactcagcgcggaatctctcaggttgtcggt
acgttccaggacaataaaggctttggattcgttataccagatgacaaaaaagtaccgatg
gacgtatttgtcgctaaaggcgacacgctaggagcagtggatggacataaggtagttgta
gagattaccgattggccaaatgaaagaaagtctgcaacagggattgtcacgaaaatcctt
ggacataaaaatgatccaggtgttgatattctatcaatcatctacaagcatgggattacg
attgacttcccgaaagaggtaatcgatcaagcagaggctgttccagatcaaatcgcagaa
ggtgatttagaaggacgcagagatcttcgggatgaggttatcgtcacaattgacggagca
gacgcgaaggatttggatgatgcagtaacagtaacaaaattgcctgacggtacatataag
cttggcgtacatattgcggacgtaagccactatgtaacagagggatctgctcttgaccgc
gaggcatacgaccgtggaacaagcgtttacttaaccgatcgtgttattccaatgattcca
catcgtctatcgaatggtatttgctcgcttaacccaaaggtcgatcgtttaacgctttcc
tgcgaaatgatcatcaacggctctggtatggtgacatcccatgagattttccaaagtgtg
atccgcacaaccgagcgtatgacatactcggatgtttataaaattttagaagaaaaagac
gaagctttaatcgagcgctataaagaccttgtgccaatgttcgagaacatggctgagctt
gcagctgtgcttagaaagaaacgtgaggaacgcggtgcaatcgactttgatttcccggaa
gctaaaattctagtagacgaggacggctggccaacagacgtagctattcgcgagcgtacg
gtggctgagaagctgatcgaggaattcatgctagctgccaatgaaaccgttgcagagcac
tttaaatggatggatgtgccgttcatttaccgtatccatgaagatcctaagccagaaaag
cttcaacgcttcttcggcttcctaacgaacttcggtttagttgtaaaaggtacaggcaac
gacattcacccgaaagcacttcaagaaatcattgaaagcatcgagggaatgccagaggag
ccagttatctcaacaatgcttcttcgctccctacagcaggcaaaatattacggagaatgc
ctaggacactttggtttatcaaccgagttctatacgcatttcacttctccgatccgtcgt
taccctgacttaatcgtacatcgtctgatccgtacgtacttagtgaatggggatgtttca
tccgcaaccatcaaccattggggtgcaatcatcgacgatatcgcagagcatacgtcgaaa
cgtgagcgtcgtgcagtagatgctgaacgtgacacggatgcactgaaaaaagcgcaatac
atggcggataaaatcggtgaggaattcgagggtatcgttagctcggttacgaacttcggt
atgttcatcgagctgccaaacacaatcgagggtcttgtccatgtgacgaacatgacagac
gactactatcgctttgacgaccgtcaaatgatgatgatcggtgagcgttctggcaagcag
ttccgtatcggggacgaggtaacggttcgcgtttcagctgtaaaaccagaggaagccgct
gtagacttcgaggttgttggcatgaagaaatcctttggccgcagcacacgtaaggaaagt
ccaaaggttatccatgcatctaaaaaaggcactggcaaggatagaaaagacaaatcacag
ccagggccgaaaaaaggaacgaatcagaaaaagaaattctatgagtccgttgcgaagaaa
tcccaaaaacgcaaacgaccaaagaaaaaataa
DBGET
integrated database retrieval system
