Pseudomonas syringae pv. tagetis: MME58_01925
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Entry
MME58_01925 CDS
T08245
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psyi
Pseudomonas syringae pv. tagetis
Pathway
psyi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psyi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MME58_01925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psyi03019
]
MME58_01925
Enzymes [BR:
psyi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MME58_01925
Messenger RNA biogenesis [BR:
psyi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MME58_01925
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UNB69060
LinkDB
All DBs
Position
complement(426317..428194)
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AA seq
625 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPANHKRSLL
AHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDV
RIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPAGDKNNGGRRDKGK
DKGKEKPAAAAATGERPARQPREKKPREGTPRSEQRASQPAIPRPTADRAPDEFRDDEVD
NFGNRADYVSPYQGKGQNRGRRPAAAPGAAPATGGAARPANQGRPAGGARNGSGSGAPKR
NGSGSSAPRSRDGQPRGRRPARDDQPLPREGQEPAVRAPRDGQPQPKIVHKESKIDRFPS
AEQLDQLPSRPRGEKPALLTRNRDS
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggcagcgggc
tatacccagcctacccccgtgcaacagcgggccattcccgccgtgttacaaggtcgcgac
ctgatggttgcggcacagaccggtactggtaaaaccggcggtttcgccctccctatcctg
gagcggctgtttcccaacggtgttccggacaaatcccagcgtcacggcccgcgccaacca
cgcgtgctggtcctgaccccgacccgcgaactggccgcacaagtgcatgagagtttcaaa
ctctatgcccgcgacctgaaattcgtcagcgcctgcatcttcggcggcgttggcatgaac
ccgcaggttcaggccatgtcccgtggtgtagacgtattggtggcctgccccggtcgcctg
cttgacctggccggtcaaggcagcgtcgacctgtcccacgttgaaatcctggtgctcgat
gaagcagaccggatgctcgacatgggcttcgtgcatgacgtcaagaaagtcctcgcgcgc
ctgcctgccaagcgtcagaacctgctgttctcggccaccttctccaatgacatcacgtcg
ttggctggcaagctgctgcacaaccccgagcgcatcgaagtcacaccgccaaacaccacg
gtcgagcgtatcgagcaacgggttttccgcctgccagccaaccacaagcgttcgctgctg
gcgcatttgatcactgtcggtgcctgggaacaggtactggtcttcacccgcaccaagcac
ggtgccaaccgtctggccgagtacctggacaagcacggccttgcggcggtcgcgatccac
ggcaacaagagccagaacgcacgcaccaaggcactggccgatttcaaggcgggtgatgta
cgcatcatggttgcgaccgatatcgcggcacgtggcctggatatcgatcagttgccgcat
gtcgtcaacttcgagctgcccaacgtcgacgaagactatgttcaccgtatcggccgtact
ggccgcgccggtcgttccggcgaagccatttcgctggttgcgccggacgaagagaagctg
ctcaaaagcattgagcgcatgaccaaacagaaaatcgccgacggcgacctgatgggcttc
gacatcactgccgtcgaggctgaaaagccggaagtgcgcgagcgtccggatgttcgcaac
tcccgtggtgcacgtcctgccggcgacaagaacaacggtggtcgtcgcgacaagggcaag
gacaaaggcaaggaaaaacccgccgctgcggccgctaccggcgaacgccctgcccggcag
ccacgcgaaaaaaaacctcgtgagggcacgcctcgcagcgaacagcgtgcatcgcagcct
gccataccgcgtccgacggcggatcgtgccccggatgagttccgcgatgacgaagtggat
aacttcggcaatcgcgctgactacgtcagtccttaccagggcaaagggcagaaccgtggt
cgtcgcccggctgccgcgcctggtgctgcaccggctaccggtggcgcagctcgtccggcc
aatcagggtcgacctgcgggcggcgctcgcaacggctcaggctcaggcgcgccaaagcgc
aacggttcgggttcgtcggcaccgcgctcacgtgatggccagcctcgtggtcgtcgcccg
gcacgtgacgatcagcccttgccgcgtgaaggtcaggagccagccgtgcgtgcaccacgc
gacggccagcctcagccaaagatcgtgcacaaggaatcaaagatcgaccgcttcccgtca
gccgagcaactggaccagttgccaagccgcccgcgcggtgaaaaaccggccctgctgacc
cgcaaccgcgacagctga
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