Pseudomonas syringae pv. tagetis: MME58_02550
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Entry
MME58_02550 CDS
T08245
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
psyi
Pseudomonas syringae pv. tagetis
Pathway
psyi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psyi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MME58_02550 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psyi03019
]
MME58_02550 (rnr)
03016 Transfer RNA biogenesis [BR:
psyi03016
]
MME58_02550 (rnr)
Enzymes [BR:
psyi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MME58_02550 (rnr)
Messenger RNA biogenesis [BR:
psyi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MME58_02550 (rnr)
Transfer RNA biogenesis [BR:
psyi03016
]
Prokaryotic type
tRNA degradation factors
MME58_02550 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
TRAM
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
UNB69176
LinkDB
All DBs
Position
589328..591961
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AA seq
877 aa
AA seq
DB search
MADWQSLDPEAAREAEKYENPIPSRELILQHLAERGSPASREQLVEEFGLTTEDQFEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRISGHRDGFGFLVPDDGSDDLFMSPAQMR
LVFDGDRALARVSGLDRRGRREGVIVEVISRAHESIVGRYFEESGIGFVVPDNPKIQQEV
LVTPGRNNSAKIGQFVEVKITHWPTPRFQPQGDVVEVVGNYMAPGMEIDVALRTYDIPHV
WPEAVLKEAAKLKPEVEEKDKENRVDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFS
GGWKLYVAIADVSSYVKIGSALDAESQVRGNSVYFPERVVPMLPEQLSNGLCSLNPHVDR
LAMVCEMTISKTGEMTDYVFYEGIIHSHARLTYNKVSTILEQPKTAEAKSLRGEYGDVVP
HLKQLYAMYKVLLGARHVRGAIDFETQETRIIFGSERKIAEIRPTTRNDAHKLIEECMLA
ANVATAQFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLTLHKGKEGPTPKDYQALLE
TVRDRPDYHLIQTVMLRSLSQAVYSSDNNGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIRSRQDTPHVRRAGAATIPKARIYPYDDALLDQLGEQCSMSERRADEATRDVVNWLKCE
YMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPLHHRLAGERTG
RNFRLGDTVEVRVMRVDLDERKIDFEISETSAAATPVGRKRRGHDTAPPAAAATAEKEKA
PARSGRRNASAKESSTEAYRPSDAAAKNAEVRKSRELKKALLADAKGGSKAPSGKSDRSG
SAPSSGKPASKHRKGSSKTGSAPAAKSSGARKSKAKS
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcagtccctcgatcccgaggccgctcgtgaagcggaaaaatacgaaaac
cccattccaagccgcgagctgatcttgcagcaccttgccgagcgcggttcgccggcaagt
cgcgagcaactggtcgaagaattcggcctgaccactgaagatcaattcgaggccctgcgc
cgtcgccttcgtgcgatggagcgcgacgcccaattgatctacacccgtcgcggcacttac
gcgccggtggacaaactggacctgatcctcggccgtatctccggccaccgtgacggtttt
ggttttctggtccccgatgacggctccgacgacctgttcatgagcccggcgcagatgcgt
ctggtgttcgacggtgaccgcgcactggcgcgtgtttccggccttgaccgccgcggccgt
cgcgaaggcgtgattgtcgaagtgatctcgcgagctcacgaaagcatcgtgggtcgctac
tttgaagaaagcggcatcggcttcgttgtgccggataacccgaaaatccagcaggaagtg
ttggtgacgccgggtcgcaacaacagtgcgaagatcggtcagttcgtcgaggtgaaaatc
acccactggccaactccgcgcttccagcctcaaggtgatgtggtcgaagtggtcggcaac
tacatggcgcctggcatggaaatcgatgtcgcgctgcgtacctacgacattccgcacgtg
tggcccgaggccgtactcaaggaggccgcgaagctcaagccggaagtcgaagagaaggac
aaggaaaatcgcgtagacctgcgccacctgcctttcgtgactatcgatggcgaagacgct
cgcgacttcgacgatgcggtttactgcgaagccaaaccgggcaagctgcgcttgttctcc
ggcggctggaagctctacgtggcgattgccgacgtatcgagctatgtgaaaatcggttcg
gcgctggatgcagaatcccaggtgcgcggcaactcggtgtacttccccgagcgtgtcgtg
cccatgctgcctgaacagttgtccaacggcctctgctcgctgaacccgcatgtcgatcgt
ctggccatggtgtgcgagatgaccatctccaagaccggcgagatgactgactatgtgttc
tatgaaggcatcatccattcccacgctcgcctgacctacaacaaggtcagcacgatcctc
gagcagccgaaaaccgccgaagccaaaagccttcgcggtgagtatggcgacgtggttccg
cacctcaagcagctttacgccatgtacaaggtgttgctgggcgcacgtcatgtgcgcggt
gctatcgatttcgaaactcaggaaacccggatcatcttcggttccgagcgcaagattgcc
gaaatccgtcctaccacccgcaacgatgctcacaagctgatcgaagaatgcatgctggct
gccaacgtggccaccgcgcaatttctgaaaaagcacgaaatccctgcgctgtatcgcgtc
cacgacggtccgccgccagagcgcctggaaaaactccgcgcattcctcggtgagctgggt
ctgaccctgcacaaaggcaaggaaggtcctacgcccaaggattatcaggcgctgctggaa
accgttcgtgaccgcccggattaccacctcatccagaccgtgatgctgcgttcgttgagt
caggctgtctacagttcggacaacaacggccacttcggtctgaattacgaagcgtacacg
cacttcacgtcgcctatccgtcgttatccagacctgctgacccatcgcgcgattcgcagt
gtcattcgctccaggcaggatacgccgcacgttcgccgtgccggtgcggcgacgatcccg
aaagcgcgcatctacccgtacgacgacgcgctgctcgaccagttgggcgaacaatgctcg
atgagcgagcgccgtgccgacgaagccacgcgtgacgtggtcaactggctcaagtgcgag
tacatgaaggatcgcgtcggtgagtcgttcccgggtgtgatcaccgctgtaaccggcttt
ggcctgttcgtcgagctgaccgatatctatgtcgaaggtctcgtccacgtaacggctctg
ccaggcgattactaccacttcgaccccttgcatcatcgccttgccggcgagcgcaccgga
cgtaacttccgtctcggcgacactgttgaagtgcgcgtcatgcgtgtcgacctggatgag
cgcaagatcgatttcgagatttccgaaacctcagcggctgctacgccggttggtcgcaag
cgtcgtggtcatgacactgcgcctcctgccgcggcagccacggctgaaaaagagaaggca
ccggccaggtccggtcgtcgcaacgcttctgccaaggaaagcagcaccgaagcctaccgg
ccgagcgatgcggcggcgaaaaacgcagaagtgcgtaaaagccgcgagctgaaaaaagca
cttctggcagacgcgaagggtggtagcaaggcgccgtcgggaaagtctgacaggtcgggc
tctgcgccttcatcgggcaaaccggccagcaaacaccgcaaaggctcgtcaaaaacgggc
tccgcgccagctgcgaaaagcagtggcgctcgtaaatccaaggccaagtcatga
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