Pseudomonas syringae pv. tagetis: MME58_16635
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Entry
MME58_16635 CDS
T08245
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psyi
Pseudomonas syringae pv. tagetis
Pathway
psyi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psyi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MME58_16635 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psyi03400
]
MME58_16635 (ligD)
Enzymes [BR:
psyi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MME58_16635 (ligD)
DNA repair and recombination proteins [BR:
psyi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MME58_16635 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
ParE_toxin
Motif
Other DBs
NCBI-ProteinID:
UNB66838
LinkDB
All DBs
Position
complement(3762518..3765154)
Genome browser
AA seq
878 aa
AA seq
DB search
MAKPASEYTRKRNFAVTSEPAESPRKGKSRSKPGALAFVIQKHDARNLHYDFRLELDGTL
KSWAVPKGPSLDPRQKRLAVHVEDHPLDYAGFEGSIPQGQYGGGDVIVWDRGIWQPHGDP
QKTYEEGKLKFTLVGEKLSGDWALVRTRLKGSGSKEQWLLIKEKDAIARPADEYDITQEQ
PQSVISGAHVGTHVGNAHADKKRSTSAKPPVKPASGKTGASASKTEASASPATTARKKSK
PDFPEALSPQLATLVDAPPAGDWLYEIKFDGYRILTRIQDDEVRLFTRNGHDWTERLPEL
VKALKGLKVKDSWFDGEVVVLDEQGLPDFQGLQNAFDAGTSKNILYYLFDMPFLGAEDLR
EVPLEQRRDALKHVLDAQRSRLLRYSDAFQAGHHDIVASAAAMGLEGVIGKRAGSAYVGK
RNADWIKLKCRLRQEFVIVGYSAPQGSRSAFGALLLAVNDGDEGLVYAGRVGTGFSEETL
AQLHKQLKKLHRKDSPLARKLSSAQARGVQWVEPKQVCEAEFAQWTREGIVRQAAFVGLR
SDKPATEVVREDAQPARVASQGQTKAKSAAPRSGKKTAQGKVDVAGIGISHPDRVIDSKT
GTSKVQLAQFYESIAEWILPYLDKRPVALLRCPEGIDGEQFFQKHAEHLAIPHIKQLDRA
LDPGHAALMEIDSLPALVGAAQMGAIELHTWGATRDRIETPDHFVLDLDPDPALPWRSMI
EATQMVLAVLEELGLDAYLKTSGGKGMHIIVPLARHADWDTVKAFAKAIAEFASRQLPER
FTATMGPKNRVGKIFIDYLRNSRGGSTVTAYSVRARPGLPVSVPIALDELAGLKSSAQWD
ISSLGQRLKQLKDDPWAGYSNRRKITQKMWKQLGAKQP
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccgccagcgagtacacacgcaagcgcaattttgccgtcacctccgagcct
gcggagagcccgcgcaaaggcaaatcccgttcgaagcccggtgcgctggctttcgtgatt
caaaagcacgatgcacgtaacctgcactacgattttcgcctggaactggacggcacgctc
aagagctgggcggtgcccaaagggccgagtctggaccccagacagaagcggctggccgtg
catgttgaagaccacccactggactatgccggtttcgagggcagcattccgcaaggtcag
tacggcggcggcgatgtgattgtctgggaccgtgggatctggcaaccgcatggcgatccg
caaaagacctatgaggaaggaaagctcaaattcaccctggtcggcgagaagctcagtggc
gactgggcactggtacgtacccggctcaaaggtagcggcagcaaggagcagtggctgctg
atcaaggaaaaggacgccattgcacggcctgctgacgaatacgacattactcaggagcag
ccgcagagcgtgatcagtggtgctcacgtcggcactcacgtcggcaatgctcatgcagac
aaaaagcgcagcacgtcggcaaagcctccggttaaacctgcatcgggcaaaaccggggcc
tcggcgtcaaaaaccgaggcatccgcttcacctgcaacaacagcgcggaagaaatcgaag
ccagacttccctgaagcgctttcgccgcaactggcgacgctggtggatgcgccgccagcg
ggtgactggctgtatgagatcaagttcgacggctaccgcattctgacccgcattcaggat
gatgaagtgcgtttgttcacccgtaacggtcatgactggaccgagcggctacccgagctg
gtcaaggcgctcaaggggctgaaagtaaaagacagctggttcgacggtgaggtcgtggtt
cttgacgagcaaggactcccggacttccaggggctgcagaatgcctttgacgccggcacc
agcaaaaacatcctgtattacctgttcgatatgccgtttctgggcgcagaagatctgcgt
gaagtgccccttgagcagcgtcgtgatgccttgaaacacgtgctcgacgctcagcgcagt
cgcctgttgcgttattcggatgcctttcaggccgggcatcatgacattgtggcgagtgct
gccgcaatgggcctggaaggggtcattggcaagcgtgccgggagtgcctatgtcggcaag
cgcaacgccgactggatcaagctcaaatgccggctgcgacaagagttcgtgattgtcggg
tactccgctcctcagggcagccgctcggcatttggggccttgttgctggcggtcaacgac
ggcgatgagggactggtgtatgccggcagggtcggcaccgggttcagtgaagagacgctt
gcacaactgcacaaacagctgaaaaagctccaccgcaaggattcaccgctggccagaaaa
ctgtcctcggctcaggcccggggtgtgcagtgggtcgagccaaaacaggtctgcgaagcg
gaattcgcccagtggacccgcgaaggcattgtgcgacaggctgcatttgtcggattgcgc
agtgacaagccagccactgaggtggtgcgcgaagacgctcagcctgccagggttgccagt
cagggccagactaaagcgaagtcggcagcgccccggagcggtaaaaaaaccgctcaaggc
aaagtggatgtggccggcatcggcatcagccatccggatcgagtgatcgacagcaagacc
ggcaccagcaaggtccagcttgcacagttctacgagtctatcgccgagtggattctgccg
tatctggacaagcgtccggtggcgttgctgcgttgtccggagggcatcgacggtgagcag
ttcttccagaaacacgccgagcatctggcgattccgcacatcaaacagctggatcgtgcg
ctggatcccggacatgccgcgctgatggaaatcgattcgctgcccgcattggtcggtgct
gcgcagatgggagccatcgagttgcatacctggggcgcgacgcgtgacaggatcgaaacg
ccggaccatttcgttctggaccttgatcccgatccggcgctgccctggcgcagcatgatc
gaagccacgcaaatggtgcttgccgtgctggaggagcttgggctcgacgcctatctcaag
accagtggcggcaagggaatgcacatcattgtgccgttggcgcggcacgcagactgggac
acggtgaaggcctttgccaaggccatcgccgagttcgccagtcgtcagttgcccgaacgt
ttcactgcgaccatggggccgaagaaccgggtggggaaaattttcatcgattacctgcgc
aacagccgaggcggcagcacagtgacggcctattcggtacgtgcccggccggggctgccg
gtctcggtgccgattgcgctggatgagctggcgggtctgaagtcgtcggcacagtgggac
atctccagcctgggacagcgcttgaagcagctcaaggacgatccgtgggccggctacagc
aaccgccgcaaaatcacgcaaaagatgtggaagcaactgggcgcgaaacagccgtga
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