Pseudomonas syringae pv. tagetis: MME58_18620
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Entry
MME58_18620 CDS
T08245
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psyi
Pseudomonas syringae pv. tagetis
Pathway
psyi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psyi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MME58_18620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psyi03019
]
MME58_18620
03009 Ribosome biogenesis [BR:
psyi03009
]
MME58_18620
Enzymes [BR:
psyi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MME58_18620
Messenger RNA biogenesis [BR:
psyi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MME58_18620
Ribosome biogenesis [BR:
psyi03009
]
Prokaryotic type
rRNA helicases
MME58_18620
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
UNB67207
LinkDB
All DBs
Position
complement(4192720..4194426)
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AA seq
568 aa
AA seq
DB search
MGLCGCTRGRPMTQEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQ
AQTGTGKTAAFALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAV
YGGAPMGPQLKAIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDD
LEVIFKAMPETRQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHA
DQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVID
SLKDGRLDIVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLV
TPRERRMLQVIERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRL
TADIGCSPRALAAALLRKATNGQALTLAAIERERPLVPNNAPRGDRPERSSDRGDRPERE
RRAPVPLAEGRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPE
DGLERLLTKLKDTRVAGKQLKLRRYRED
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgggtctttgcggatgcactagaggcagacccatgacccaggaaatcggcggcttcgcc
gctctcgaacttcatccaaatatcgttgcagcagttgtcgccaccggctacgaagagcct
tcggccatccagcagcaatcgatcccgattattctcgccggtcacgacatgattggtcag
gcgcaaaccggtacgggtaaaaccgctgcgttcgcactgcctatcctgcatcgtatcgac
ccgagcaagcgcgagccgcaagcactgatcctggccccgacccgcgaactggcacttcag
gttgccaccgcgttcgagacctacgccaaacaaatgccgggcgtgaccgttgtagcggtc
tacggcggcgcgccgatgggcccgcagctcaaggccattcgcaacggcgcacagatcgtc
gtcgcaactcctggccgtctctgcgaccacctgcgtcgcgacgagaaagtcctggcaacc
gtgaaccatctggttctcgacgaagcagacgaaatgctcaagctgggcttcatggacgac
cttgaagtcatcttcaaggcgatgcctgaaacccgccagaccgtactgttctcggccaca
ctgccgcagtcgatccgtgccatcgccgagcgccatctgcgcgatccgaagcacgtcaag
atccagaccaagacccagaccgttaccgcgatcgagcaggctcacctgctggttcacgct
gaccagaagacctcggctgttctgagcctgctggaagttgaagacttcgacgccctgatc
atgttcgtccgcaccaagcaggcgaccctggatctggcaagcgctctggaagccaaaggc
tacaaggctgccgcactgaacggcgacatcgcccagaaccagcgcgagcgcgttatcgac
tccctcaaggatggccgcctggacatcgttgtggcgactgacgttgctgcccgcggtctt
gacgttccgcgtatcacccacgttttcaacgtggacatgccttacgatcctgagtcctac
gttcaccgtatcggccgtaccggccgtgcaggtcgcgaagggcgcgcactgctgctggta
actcctcgcgagcgccgcatgctgcaagtgatcgagcgtgtgaccggccagaaagttgcg
gaagtccgcctgccggatgcccaggccgttctggatgcgcgcatcaagaaactgaccaac
agcctgtcgccgctggtcgctgatgccgaatcgactcatggtgatctgctggatcgtctg
actgccgacatcggttgcagccctcgtgcccttgctgctgcattgctgcgcaaggctacc
aacggtcaggcgctgactctggcggctatcgagcgcgagcgtccactggttccgaacaac
gctccgcgcggtgatcgtcctgagcgcagcagcgaccgtggtgatcgtcctgagcgtgag
cgtcgtgcgccggttccattggccgaaggtcgtgctcgttgccgtaccgcgctgggtgcg
cgtgacggtatcgccgccaagaacctgctcggtgccattctcaacgaaggcggcctggcc
cgcgaagcgatcggccggatccaggtgcgtgacagcttcagtctggtcgagttgccggaa
gatggtcttgagcgtctgctgaccaagctcaaggacacccgtgtcgccggcaagcagctc
aagctgcgtcgctatcgcgaagactga
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