Pseudomonas syringae pv. tagetis: MME58_19005
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Entry
MME58_19005 CDS
T08245
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
psyi
Pseudomonas syringae pv. tagetis
Brite
KEGG Orthology (KO) [BR:
psyi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psyi03009
]
MME58_19005 (rlmD)
Enzymes [BR:
psyi01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
MME58_19005 (rlmD)
Ribosome biogenesis [BR:
psyi03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
MME58_19005 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
MTS
Methyltr_RsmB-F
PCMT
TRM5-TYW2_MTfase
Methyltransf_11
Methyltransf_15
Methyltransf_23
RrnaAD
Cons_hypoth95
PabTrmU54_TRAM_dom
DREV
Motif
Other DBs
NCBI-ProteinID:
UNB67277
LinkDB
All DBs
Position
complement(4273244..4274599)
Genome browser
AA seq
451 aa
AA seq
DB search
MARHERGLRFQPTGGVKTAQIPAGKKQRLSIERLSDDGRGIAFLDGKTWFVAGSLAGEEV
EARVLNARGKIVEARTERVFAASDMRRAPACDYFGRCGGCSVQHVPHEEQLALKQRMLAE
QLLRVANVVPDEWAAPLSGSELAYRRRARVAVRWDAKAKRLDVGFRAAASQDIVNIEECP
VLVQALQPIMSQLPGMLKSFSKPQVLGHVELFSGSSTAVLLRHTAPLADADLASLRAFCS
MHGAQLWLHGDGEPQPVSAGDTLGYRLEPWNLQLAWRPGDFIQVNAAVNTAMIEQALQWL
APAKDERVMDLFCGLGNFALPLAGLVKEVVAVEGVATMVERAAVNAMSNDLHNVQFFQAD
LSQPLTHADWAAEGFSAVLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDAVELI
SQGYRLKRAGILDMFPQTAHVEAMALFEMSK
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atggccaggcatgaacgaggtctgcgctttcagcccacgggcggcgtcaagaccgcgcag
attcctgccggtaaaaaacagcggctgagcattgagcgactgtccgacgacggccgcggt
attgcctttctcgacggcaagacctggtttgtcgccgggagccttgcaggcgaggaggtc
gaggcccgggtgctcaatgcacgtggcaagattgtcgaggcccgtaccgagcgggtcttt
gccgccagcgacatgcgccgcgcgccggcctgtgattatttcggtcgctgcggtggctgc
agtgttcaacacgtgccccatgaagagcagcttgccctgaaacagcgcatgctcgccgag
cagttgctgcgcgtggcgaacgtggtgccggatgaatgggccgcgccgttgagcgggtcc
gaactggcctatcgtagacgcgcgcgggtcgcggtgcgctgggatgccaaggccaaaagg
ctggacgtgggcttccgcgcggccgccagccaggacatcgtcaacatcgaagaatgtccg
gtgctggtacaggccttgcaaccgatcatgagccagttgcctggcatgctgaaaagcttc
agcaaaccgcaggtgctgggtcacgtcgagctgttcagtggttcttcgaccgccgtgttg
ctgcgccataccgcgccgctcgccgatgccgacctggccagcctgcgggcgttctgctcg
atgcacggtgcgcagctctggctgcatggcgacggcgagccccaaccggtcagcgcgggc
gatacgctgggttaccggctggagccgtggaacctgcaactggcctggcgaccgggagat
ttcattcaggtcaacgcggcggtcaataccgcgatgatcgagcaggccctgcaatggctg
gcacctgcgaaagatgaacgggtgatggatctgttctgcggtctgggcaattttgccttg
ccgctggccggtctggtgaaggaagtggtggcggtcgaaggcgttgcgaccatggtcgag
cgtgcagccgtcaacgcaatgagtaatgatttgcacaatgtgcagttttttcaggcggac
ctttcccagccgctgacacatgccgactgggcagcggaagggttttctgcggtactcttg
gacccgccgcgtgacggggcctttgaagtggttcgccagatcagaaaaacaggtgcccgg
cgactgctttatgtgtcatgcaacccggcaactttggctcgtgacgcggtcgaactgatc
agtcagggctaccgattaaaacgtgccggaattctcgatatgtttcctcagacggcgcat
gtcgaggcgatggctttatttgaaatgagtaagtga
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