Pseudomonas syringae pv. tagetis: MME58_19650
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Entry
MME58_19650 CDS
T08245
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
psyi
Pseudomonas syringae pv. tagetis
Brite
KEGG Orthology (KO) [BR:
psyi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psyi03019
]
MME58_19650 (hrpA)
Enzymes [BR:
psyi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MME58_19650 (hrpA)
Messenger RNA biogenesis [BR:
psyi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MME58_19650 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
AAA_25
NACHT
T2SSE
Motif
Other DBs
NCBI-ProteinID:
UNB67398
LinkDB
All DBs
Position
complement(4422734..4426645)
Genome browser
AA seq
1303 aa
AA seq
DB search
MTDESPSIDQLLKNLDQAMISERHRLRRQLHDLRKKPDEAKLAQWVARVQASCAQVTARR
ESVPTIRYDDNLPIAAKRDEIKEALLKHQVLIIAGETGSGKTTQLPKICLEIGRGQHGLI
GHTQPRRIAARSVASRVADELGTPLGALVGYQVRFEDQSDSNTLIKLMTDGILLAETQHD
RFLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLQRFSEHFNGAP
VIEVSGRTFPVDLWYRPLTSEQDEEGNSVEDDLTVDQAILATLDELAAFERTERKSPGDV
LVFLPGEREIRDAAEVLRKAQLRHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET
SLTVPGIRYVIDTGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGLCVRLYS
EEDFNGRPEFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQELS
AVNRENQLTPLGRQLARLPVDPRMGRMLLEAAKQGSLQEVLIVASAMSVQDVRERPPERQ
QAADQAHAQWKDADSDFAGLVNLWRGFEEQRQTLTASPLRNWCRRNFLNYLRLREWRDSH
RQLSLICRDLQLTVNKEPADYPKFHKAILSGLLSQIGQKAEEGDYLGARQRRFWIHPSSG
LGKKRPQWLMTAELVETTKLYARMVAKIDSDWIEPLAGHLIKKNHFEPHWEKKRGQVVAF
EQITLFGLIVVGRRPVHFGPVDPVVSRELFIREGLVRGDILSRARCLSANTRLLEQLDEL
EAKARRRDILADEDTLYSFYEARIPAEIHQTATFDSWYKTESQKNPQLLIMREEDVLARE
ASEVTAAQYPDTLHLGDLSLSLSYHFEPNHPRDGVTLRVPAPLLLSLPAERLEWLVPGLL
ETKSIALVRNLPKAVRKNFVPVPDFIKAALQRITFGEGSLPQALGRELLRMTGVRVSDEA
WTEAAQQLEGHLKMNLEIVDGSGKFLGEGRDLAELTARFAEASQAALAVPQSAKSQQPVQ
AKAFAAVAQKTQQNIAGLSMTVYPALVEEGGAVKEGRFSTQAEAEYQHRRALQRLLLQQL
AEPAKFLRNKLPGQTELALLHRELGRIDALIEDILLASLDSCVLEGEAELPRDGAGLLSL
AERKRADWTEHAERMAKLTLEILKLWHGLQKRFKGKIDLSQAVALNDIKAQLSRLVYPGF
VRETPAVWFKELPRYLKAIEMRLEKLPGQVQKDRVWSIELAGLWTQYQTRADKHAQEGKR
DPELALYRWWMEEYRVSLFAQQLGTKMPVSYKRLSKQWSQVEA
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgaatcgccttctatcgaccaactcctgaaaaacctcgaccaagcgatgatc
agcgaacgtcatcgtctgcgccgtcagttgcatgatctgcgcaaaaaacctgacgaggcg
aagctggcgcagtgggttgcacgggtccaggcgtcttgcgcgcaggtgacggcacgtcgt
gagagcgtgccgacgatccggtatgacgacaacttgcccatcgccgccaagcgcgatgag
atcaaggaggcgttgctcaagcatcaggtgttgatcattgcaggtgagacaggctccgga
aagaccacccagttgccgaaaatctgccttgaaatcggtcgcggccagcacggtctgatc
ggtcatacccagccgcgcaggattgccgcacgcagtgtggccagccgggtggccgacgaa
ctggggacaccgctgggcgcgcttgtcggttatcaagtgcgcttcgaggatcagagcgac
agcaacacgctgatcaaactcatgaccgacggtatcctgctggccgaaacccagcatgac
cgctttctcgagcgctacgacactatcatcgtcgacgaagcccatgagcgcagcctgaac
atcgactttctgctcggctacctgaaaaccctgctgccacggcgtccggacctgaaggtc
atcattacctccgcgaccatcgacctgcagcgcttctccgaacacttcaacggtgcgccg
gtgattgaagtgtccgggcgtacgttccccgtagacctctggtatcgcccgctgaccagc
gagcaggacgaggaaggcaacagcgtcgaagacgatctgacggtcgatcaggccattctg
gccacgctggatgagctggcggccttcgagcgtaccgaacgcaagagcccgggcgatgtg
ctggtgtttctgcccggcgagcgcgagattcgcgatgccgccgaagtgctgcgcaaggcg
cagctcaggcacaccgagattctgcccctgtatgcacgcctttcgcccgccgaacagcag
cgcatttttcagtcgcatcccggtcgtcgtgtggtgctggcgaccaacgtggccgaaacc
tcgttgacggtgccgggcatccgttacgtgatcgacaccggtactgcgcgcatcagccgc
tatagctatcgtgccaaggtccagcgcctgccgatcgaggccgtgtcccaggccagtgcc
aaccagcgcaagggccgttgcggacgtgtcgaacccggtctgtgcgtgcgtctgtacagc
gaagaggatttcaacggtcggcctgaattcactgaccccgagatcctgcgcaccaacctg
gcggcggtcatcctgcagatgctgcacttgcgcctgggcgagatcaccgatttcccgttc
atcgagccgccggatggcaaggcgatcagcgacgggttcaacctgctgcaggagctttct
gccgtcaatcgcgagaatcagctgaccccgctgggccgccagctggcgcgtctgccggtg
gacccgcgcatggggcgcatgcttctggaagcggcgaaacagggcagtctgcaagaagtg
ttgatcgtggccagcgccatgtccgtacaggatgtgcgcgagcgccctcccgagcgtcag
caggcggccgatcaggcccatgcgcaatggaaggacgccgattcggacttcgccgggctg
gtcaatctgtggcgtggtttcgaagagcagcgtcagacgctgactgccagcccgctgcgc
aactggtgtcgacgcaactttctgaattatctgcgcctgcgtgagtggcgcgactcccat
cgacaactaagcctgatttgccgtgatctgcaactgacggtcaacaaagagccagccgat
tacccgaaattccacaaggccattctctccggcctgttgagccagatcgggcaaaaggcc
gaggagggcgattacctcggcgctcggcagcggcgcttctggattcatccgtcttccggg
ctgggcaagaagcgtccgcaatggctgatgaccgccgaactggtagaaaccaccaagctg
tacgcacgcatggtcgccaagatcgattcggactggatcgagccgctggctggccacctg
atcaagaaaaatcatttcgagccgcactgggagaaaaagcgcggacaggtcgtagcgttc
gagcagatcacgctgttcggcctgatcgtagtgggccgtcgcccggtgcattttggccct
gtcgacccggtggtctcgcgcgagttgttcatccgcgaaggtctggtgcgtggcgatatc
ctgtcccgggccaggtgcctgagcgccaatacccgcctgctggagcagctcgacgagctg
gaggccaaggctcgacgtcgcgatattctggctgacgaagacaccttgtacagcttctat
gaggcgcgaatcccggccgagattcaccagacggccacgttcgacagttggtacaagacc
gaaagccagaagaacccgcaactgctgatcatgcgtgaagaggacgtgctggcccgcgag
gccagcgaagtcactgccgcgcagtatccggataccttgcacctgggcgacctcagcctg
tcgctgagttatcacttcgagcccaaccacccacgcgatggcgtgacgttgcgcgttccc
gcacccttgttgctgtcgctgcctgccgagcgcctggagtggctggtgccgggattgctg
gagaccaagagcattgcactggtccgcaatctgcccaaggctgtgcgcaagaacttcgtg
ccggtcccggacttcatcaaggccgcattgcaacgtattacctttggcgagggttcattg
cctcaggcgctggggcgtgagctgctgcgcatgaccggcgtgcgggtcagcgacgaggcc
tggaccgaggcggcacagcagcttgaaggccatctgaagatgaacctggaaatcgtcgat
ggcagtggcaagttcctcggtgaggggcgtgatctggccgagctgacggcgcgcttcgcc
gaggccagtcaggcggcactggctgtgccgcaaagcgcaaagagtcagcagccggtgcag
gccaaggcttttgctgcagtggcgcagaagacacagcagaacatcgccgggctgtcgatg
acggtgtacccggcgctggtcgaagagggcggagcggtcaaggaaggccggttttccacg
caggccgaggccgagtatcagcatcgccgcgccttgcagcgtctgctgttgcagcagttg
gccgaaccggcaaaatttctgcgcaacaaattaccggggcagaccgaactggccttgctg
caccgtgagctggggcgcatcgatgcattgatcgaggacatcctgctggccagtctcgac
agttgcgtgcttgaaggtgaagccgagttgccgcgcgacggtgccggtctgctgtcactg
gccgagcgcaaacgcgccgactggaccgaacacgccgaacggatggcgaagctgacgctg
gaaatcctcaaactgtggcatgggctgcaaaagcgcttcaaaggcaagatcgatctgtct
caggccgttgcgctcaacgatatcaaggcgcaactgagcaggctggtgtaccccgggttc
gtgcgtgaaaccccggcggtgtggttcaaggaactgccgcgctacctgaaagccatcgag
atgcgtctggaaaagctgccgggtcaggttcagaaggaccgggtgtggagcatcgaactg
gcaggcctgtggacgcagtaccagacgcgtgccgacaaacatgcccaggaaggcaagcgt
gatccggaactggcgctgtatcgctggtggatggaggaataccgcgtttcactgttcgct
cagcaactgggcaccaaaatgccggtgtcgtacaaacggttgagcaagcagtggagtcag
gtggaagcctga
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