Pseudomonas syringae pv. tagetis: MME58_21185
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Entry
MME58_21185 CDS
T08245
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
psyi
Pseudomonas syringae pv. tagetis
Pathway
psyi02020
Two-component system
psyi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
psyi00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
MME58_21185
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
MME58_21185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psyi03021
]
MME58_21185
Transcription machinery [BR:
psyi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MME58_21185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
CCDC14
HTH_IclR
HTH_21
Motif
Other DBs
NCBI-ProteinID:
UNB67687
LinkDB
All DBs
Position
4763732..4765225
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AA seq
497 aa
AA seq
DB search
MKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGDDFDNSD
PLADNIEQKPNPDVQEPTYQESAPTVDNLEDGEWNERIPNELPVDTAWEDIYQTSASSLP
SNDDDEWDFTTRTSAGESLQSHLLWQLNVAPMSDKDRLVAVTLIDCINNQGYLDETLDEI
LESFDPELDIELDEIEAVLHRIQQFEPAGVGARNLSECLLLQLRQLPAKTPWLAEAQRLV
TDYIDLLGSRDYGQLMRRMKLKEDELRQVIELVQSLNPRPGSQIESTEAEYVIPDVIVRK
DNERWLVELNQESVPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNETL
MKVATQIVEHQRGFLEYGDEAMKPLVLHDIAEAVGMHESTISRVTTQKFMHTPRGIYELK
YFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAK
YRESLGIAPSSERKRLM
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccatcgctagtcttgagaatgggccagcagctgacgatgacaccgcagctgcaa
caggcaatccgcttacttcagctttccactctggacctccagcaggagatccaggaagcg
ctggagtcaaatcccatgctggaacggcaggaagaaggcgacgacttcgataactccgac
ccgcttgccgacaacatcgaacaaaagcccaaccctgacgttcaggaaccgacctatcag
gaatccgcgccgactgtggataaccttgaagatggcgaatggaacgagcgtatccccaat
gaactgcctgtcgatacggcatgggaagacatttaccagaccagcgccagcagcctgcca
agcaacgatgatgacgagtgggacttcaccacacgcacctctgcaggcgaaagcctgcaa
agccacctgctgtggcaattgaacgtcgcgccaatgtccgacaaggaccgtcttgtggcg
gtcacgctgatcgattgcatcaacaatcagggctatctggacgaaacgctcgatgagatt
ctcgagtctttcgatcccgagctggacatcgaactcgacgagatcgaagccgtactgcac
cgtatccagcagtttgaaccggcaggcgtcggcgcgcgaaacctgagcgaatgcctgctg
ctgcaattgcgtcagttgccggcgaaaacgccgtggctggcagaagcacaacgcctggtc
accgactatatcgatctgctgggaagccgcgactacggtcagttgatgcggcgcatgaag
ctcaaggaagacgagctgcgccaggtcatcgaactggtccagagcctcaacccgcgccct
ggctcacagatcgaatccacagaagccgaatatgtcattcccgacgtgatcgtgcgcaag
gacaacgagcgctggctggtcgaactcaatcaggagtcagtaccgcgcctgcgcgtcaac
ccgcaatacgccggctttgtgcgccgcgccgataccagcgcagacaacaccttcatgcgc
aatcagttgcaagaggcgcgctggttcatcaagagcctgcaaagccgcaacgagacgctg
atgaaggtcgccacacagatcgtcgaacaccagcgcggttttctcgaatacggtgacgag
gccatgaagccgctcgtcctgcacgatattgccgaggcagtgggaatgcatgagtcgacc
atctcgcgcgtgaccactcagaaattcatgcacactccacgtggcatttacgagctgaaa
tacttcttctcaagccatgtaagcacttccgagggcggcgaatgctcgtcaacggcaatt
cgcgcaatcatcaaaaaactggttgcggcggaaaatcagaaaaagccgttgagtgatagc
aagatcgctggtttactggaggcacaaggcattcaagtagcccgtcgcacagtcgccaag
taccgcgagtcactcggtatagcgccttccagtgagcgtaagcggctgatgtga
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