Pseudomonas syringae pv. tagetis: MME58_23245
Help
Entry
MME58_23245 CDS
T08245
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psyi
Pseudomonas syringae pv. tagetis
Pathway
psyi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psyi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MME58_23245 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psyi03021
]
MME58_23245 (rpoC)
03400 DNA repair and recombination proteins [BR:
psyi03400
]
MME58_23245 (rpoC)
Enzymes [BR:
psyi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MME58_23245 (rpoC)
Transcription machinery [BR:
psyi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MME58_23245 (rpoC)
DNA repair and recombination proteins [BR:
psyi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MME58_23245 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
BSH_YknX
DUF3150
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
UNB68071
LinkDB
All DBs
Position
complement(5195270..5199469)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKVKVRIHETVNDRDGGSVKNTRIVDTTVGRALLFQVVPAGLSYDVVNQPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIDAATEE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMSNLSKEKVIDRHGVEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEVDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGHLVAVSRSGELAIADDFGRERERYKLPYGAVISVKEGDKVDAGSIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM
VGLDGKDLLLPGTDVPAQYFLPANALVGVADGAQIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTHVLVENERLSTEDKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRREMDKPMR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgcaatc
cgtatcggacttgcatcgcctgagatgatccgctcttggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaagcctgagcgtgacggtctgttttgcgccaaa
atctttggcccggtaaaagattacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgcggtgtcatctgcgaaaaatgcggtgttgaagtggctctggccaaggttcgtcgcgag
cgtatggctcacatcgaactggcttcgccggttgcgcacatctggttcctgaaatcgctg
ccgtcccgtatcggcctgctgatggacatgaccctgcgtgatatcgaacgtgttctctac
ttcgagagctatgtcgttatcgatccaggcatgactacccttgaaaaaggccaactgctg
aacgacgagcagtatttcgaagcgcttgaagagttcggtgacgacttcgacgcccgtatg
ggtgccgaggctgttcgcgagctgctgcacgctattgatctggagcacgagattggccgt
ctgcgcgaagaaattccgcaaaccaattccgagaccaaaatcaagaagctgtccaagcgt
ctgaaattgatggaagccttccagggttccggcaaccttcctgagtggatggtgctgacc
gttctgccggttctgccgccagatctgcgtcctctggttccgcttgacggtggccgtttc
gcgacgtccgacctcaacgatctgtatcgtcgagtgatcaaccgtaacaaccgtctgaaa
cgcctgctggatctgtctgctcccgatatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggtcgatgccctgctcgataacggccgtcgcggtcgtgcgatcacaggttcgaac
aagcgtcctctgaaatccctggctgacatgatcaagggtaagcaaggtcgtttccgtcag
aacttgctcggcaagcgtgttgactactcgggccgttcggtaattaccgtaggtccgacc
ctgcgtctgcaccagtgcggtctgccgaagaagatggctctcgagctgttcaagccgttc
attttcggcaagctggaaatgcgtggcctggctacgaccatcaaagctgccaagaagatg
gtcgagcgcgagctgccagaggtctgggacgttctcgctgaagtgatccgcgaacacccg
gtgctgctgaaccgtgcgccgacgcttcaccgtctgggcatccaggcgtttgagccggta
ctgatcgaaggtaaggctattcaactgcacccgctggtctgtgctgcctacaacgccgac
ttcgacggtgaccagatggccgttcacgtgcctctgacgctggaagctcagctggaagcg
cgcgcgctgatgatgtcgaccaacaacattctgtcgccagccaacggtgagccaatcatc
gttccttcgcaggacgttgtattgggtctgtattatatgactcgtgaagcgatcaacgcc
aagggcgaaggtcgtgtgtttgccgatctgcaggaagtcgaccgcgtattccgcgccggc
gaagcggctctgcatgccaaggtcaaggttcgtatccacgaaacggtcaacgaccgtgac
ggtggcagcgtcaagaacacccgtattgtcgacactactgttggccgtgcgctgctgttc
caggtggttccggccggcctgtcctacgacgtcgtcaaccagcctatgaagaagaaagcg
atctccaagctgatcaaccagtgctaccgcgtggttggtctgaaagagaccgttatcttt
gctgaccagttgatgtacaccggttttgcctactcgactatttcgggtgtttccatcggc
gttaacgatttcgttatcccggatgaaaaagctcgcatcatcgacgcggccactgaagaa
gttaaagagatcgaaagtcagtacgcctccggcctggtcacccagggcgagaagtacaac
aaggtgatcgacctctggtccaaggccaacgacgaagtttccaaggcaatgatgtcgaac
ctctcgaaagagaaggtcatcgatcgtcatggcgtcgaagttgaccaggaatccttcaac
tcgatgtacatgatggctgactccggtgcgcgtggttctgctgcccagattcgtcagttg
gcgggtatgcgtggtctcatggccaagcctgacggctccatcattgaaacgccgatcacc
gcgaacttccgtgaaggtttgagcgtacttcagtacttcatctctactcacggtgctcgt
aagggtcttgcggatacggcattgaagaccgccaactccggttatctgactcgccgtctg
gtagacgtggctcaggatctggtggttaccgaggtggattgcggtaccgagcacggtctg
ctgatgactccgcacattgaaggcggcgacgttgtagagccgctgggtgagcgcgtactg
ggtcgagttatcgcccgtgacgtgttcaagccgggcacagaagacgtcatcgtgcctgct
ggcacactggtcgacgagaagtgggtcgagttcatcgagctgaacagcattgacgaagtg
atcgttcgttcgccaatcagctgtgaaacccgctacggcatctgcgccaagtgctacggt
cgcgacctggctcgtggtcaccaggtcaacatcggtgaagctgtcggcgtaatcgctgca
cagtcgatcggtgagccaggtacccagctgacaatgcgtacgttccacattggtggtgcg
gcaagccggacctcggcagccgacagcgttcaggtgaagaatggcggtactgtccgtctg
cacaacctgaagcacgtcgagcgtgttgacggtcacctggttgcggtatcccgctccggt
gaactggcaattgccgatgacttcggtcgcgagcgtgagcgttacaagctgccatacggt
gctgtgatttcggtgaaggaaggcgacaaggtcgacgctggctcaatcgtagccaagtgg
gacccgcacactcacccgatcgttaccgagatgaaaggtactgttacctacgtcggcatg
gaagaaggcatcacgatcaagcgtcagacagacgaattgaccggtatgaccaacattgaa
gtgcttgatgccaaagaccgtccggctgccggcaaggacatccgtcctgccgtgaagatg
gtgggtctggatggcaaggatctgctgctgcctggtactgacgtaccggcccagtacttc
ctgcctgcgaacgccctggtcggtgttgccgacggtgcgcagatcgcgatcggtgatgtt
atcgctcgtattcctcaggaaacttcgaaaactcgtgacatcaccggtggtctgccgcgt
gttgccgacctgttcgaagcgcgtcgtccgaaagaggcgtcgatccttgcagaagtcagc
ggtaccatcgcgttcggcaaagagaccaagggcaagcgccgtctggtcattaccccgaac
gatggcagcgatccgtacgaggagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgagcaagtgaaccgcggcgaagtaatctccgacggtcctagcgatccacacgacatc
ttgcgtctgttgggtgtgagtgcgctggccaagtacatcgtcaacgagattcaggacgta
taccgtctgcagggcgtgaaaatcaacgacaagcacatcgagacgattctgcgtcagatg
ctgcgcaaggttgagattgccgagtctggcgattccagtttcatcaagggcgaccagatg
gaattgactcacgttctggtagagaacgagcgtctgagcacggaagacaaatttgtttcc
aagttcactcgcgtgttgctgggtatcaccaaggcatcgctgtccaccgaatcgttcatc
tccgcggcctccttccaggagacaacccgcgtactgaccgaagcggctgtgaccggcaag
cgcgattacctgcgcggcctgaaggaaaacgtggtcgtgggtcgtctgatcccggccggt
accggtctggcttatcacagcgagcgcaagcgtcgtcgtgaaatggacaaaccgatgcgt
gtcagcgcgagcgaagtagaagccgctctgactgaagcgttgaactccagcggtaactga
DBGET
integrated database retrieval system
