Psychrosphaera ytuae: J1N51_02770
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Entry
J1N51_02770 CDS
T07123
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
psym
Psychrosphaera ytuae
Pathway
psym03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psym00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
J1N51_02770 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psym03400
]
J1N51_02770 (sbcB)
Enzymes [BR:
psym01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
J1N51_02770 (sbcB)
DNA repair and recombination proteins [BR:
psym03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
J1N51_02770 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
J1N51_02770 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
J1N51_02770 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
QTH64426
UniProt:
A0A975HIM6
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All DBs
Position
608642..610075
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AA seq
477 aa
AA seq
DB search
MKDQQPSFYWYDFETWGVSPKKDKPSQFAGIRTDLDLNIIGEPLVEYCQIPNDYLPHPEA
ALVTGITPQTTLQKGLIEPEFFKKIHREISKPNTINVGYNNVRFDDEVIRYGLYRNFYDS
YGYAWKNGNSRWDILDMVRACYALRPEGINWPTDEEGKPSFRLELLTKANGIEHGAAHDA
LSDVIATIELAKLIKQKQPKLFQFLLDHRHKKQLQELIDVYRMTPLVHTTGMFSAWQGCT
SWVSPIGFHPTNKNAVIIYDLTKDPSRLVDLSTDELKEKLYSKTEDLNGEERVGLKLVHL
NKCPVLAPAKTLLPENAERLGIDREACLRNLKFLQENKQLVINLNEVFNDERVFEPDTNP
EYRLYEGFTSDADQHVKDTIQQHEIQDHWKLNIQFEDKKLNELWRIYKARYFTSQLDHKD
VVWWQQYRADKLMHGVDSPSLTVDEFQQALEKAAEKNQGNDRNTAILKELFLYAQQL
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatcaacaaccgagtttttattggtacgactttgaaacatggggcgtaagtcct
aaaaaagacaaaccgagccaatttgctggcattcgtacagatttggatctaaatattatt
ggtgaaccactcgttgagtattgccaaatacccaatgactacttaccacatcctgaagca
gcactcgttacgggaattaccccacaaacaaccttacaaaaaggtctaattgagcctgag
tttttcaaaaagattcatcgagaaattagcaaaccaaatactataaatgtcggttataac
aacgtgagattcgacgatgaagtcattcgttatggtttatatcgaaacttttatgactca
tatggctatgcgtggaaaaacggcaactcccgatgggatattttagatatggttcgagcg
tgttatgccctgcgaccggaggggataaattggccaactgatgaggaaggtaaaccctcc
tttagattagagttattgactaaagccaacggaattgaacacggtgctgcgcatgacgca
ttatctgacgttatcgcgacaattgaattggctaagttaattaagcaaaaacaacccaaa
ctttttcaattcttgttagaccatcgtcataaaaaacagttacaagaactcattgatgtt
taccgtatgacccccctagttcacacgacgggtatgttttcggcgtggcaaggatgtacc
tcttgggtgtcaccaattggttttcatccgacgaataaaaatgcagtcatcatttatgac
ttgactaaagacccatctcgtttagtagatctaagtacggatgaattaaaagaaaaactt
tatagcaaaacagaagatttaaacggtgaagagcgtgtcggtttaaaattagttcattta
aacaagtgtccggtactcgcaccagccaaaactcttttgccagaaaacgctgaacgatta
ggaattgaccgcgaagcttgtctaagaaatctaaagtttttacaagaaaacaaacaatta
gtaattaatctaaatgaagtgtttaatgacgagcgagtttttgagcctgatacaaatcct
gaatatagattatatgaaggttttacaagtgatgccgatcagcacgttaaagatacgatt
caacaacacgaaattcaggaccattggaagcttaacattcaatttgaagataaaaagtta
aatgaattatggcggatatataaagcacgatattttacgtcacaactggaccacaaagat
gtagtttggtggcaacaatatcgcgccgacaagcttatgcacggtgtagatagcccaagt
ttgactgttgatgagtttcaacaagctcttgagaaagcagccgagaaaaaccaaggtaat
gatagaaataccgcaatattaaaagagctattcctgtatgctcaacaactatag
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