Psychrosphaera ytuae: J1N51_08470
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Entry
J1N51_08470 CDS
T07123
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psym
Psychrosphaera ytuae
Pathway
psym03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psym00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J1N51_08470 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psym03021
]
J1N51_08470 (rpoC)
03400 DNA repair and recombination proteins [BR:
psym03400
]
J1N51_08470 (rpoC)
Enzymes [BR:
psym01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J1N51_08470 (rpoC)
Transcription machinery [BR:
psym03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J1N51_08470 (rpoC)
DNA repair and recombination proteins [BR:
psym03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J1N51_08470 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
Biotin_lipoyl_2
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QTH62810
UniProt:
A0A975D915
LinkDB
All DBs
Position
complement(1903103..1907263)
Genome browser
AA seq
1386 aa
AA seq
DB search
MKDLLKFLKQQNKSEEFDSIRIGLASPDVVRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESYAVTEPGMTTLEKGQMLSEEEYLDALEEHGDEFDAKM
GAEAVFELLKDIDINQQYAEMKEELPTVTSETKRKKLTKRLKLMEAFVQSGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LKLHQCGLPKKMALELFKPFIYGKLEIRGMATTIKAAKKMVEREAAEVWDILDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDRINAKGEGQVFKDPKEAEKAYRSG
NADLHARVKVRMQEVTIAADGERTSKTVIKETTVGRAILSMIAPEGFPFDLMNQAIGKKQ
ISMLINECYRRLGIKDTVVFADQIMYTGFHYAMLAGNSIGIDDMVIPQAKYDLIEDAQAE
VAEIQDQFQQGLVTAGEKYNKVIDIWSTANEKVSKAMMDNLSTETVINRDGEEETQPSFN
SVFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVGQDLVVNEVDCGTTEGLVMKPLIEGGDVVEPLRERVL
GRVTLSDVTAPNSDEVLVEAGVMLDEKLCDLLEAHSVDEVEVRSIITCDNDFGVCAMCYG
RDLARGHLINQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRNTAANSVQVKNDGTIRL
HNAKHVTNADGKLVITSRSAEVTVIDDHGRERERYKLPYGAVMTIADGAEVKGNDTVANW
DPHSHPIIVERPAKIQFSDVEEANTEVQTDELTGLTRTVVKDLSLANAKEPKLIMDAGDS
GLQEIRLPSFTTIEVRDGADVVPGDVLARIPQEGSKTRDITGGLPRVADLFEARKPKEPA
ILAEISGVVSFGKETKGKKRLVITPAEGDAHEEMIPKWRQLNVFEGESVERGEVIADGPE
SPHDILRLRGITAFSNYIVNEVQEVYRLQGVKINDKHIEAICRQMLRKAIITDAGQSEFL
VGEQVEVSTVKIANRKLAAEGKDLVKFDRDLLGITKASLATESFISAASFQETTRVLTEA
AVSGKRDELRGLKENVIVGRLIPAGTGFSYHQEKAAAAAAFDEAEETVSAEDAEQALADA
LNAEAE
NT seq
4161 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttttgaaacaacaaaataaaagcgaagagtttgattcaatt
cgaatcggcttagcgtcaccagacgtagttcgctcttggtcttttggtgaagttaaaaag
cctgagaccattaactatcgtacgttcaaacctgagcgtgatggtttattctgtgcgcgt
attttcggcccagtgaaagattacgagtgtttgtgcggtaagtacaagcgtcttaaacac
cgtggtgttatctgtgaaaaatgtggcgttgaagtaacgttgactaaagtgcgtcgtgag
cgcatgggtcacatcgagctagctagcccggttgcacacatctggttccttaagtcactt
ccgtctcgtatcggcttaatgcttgatatgacgttacgtgatatcgaacgtgttctttac
ttcgaatcatacgcagtaacagagccgggcatgacgacacttgaaaaaggtcaaatgctt
tcggaagaagaatacctagatgcattagaagagcacggtgatgagtttgatgcgaagatg
ggtgccgaagcggtattcgaacttcttaaagacatcgacatcaaccagcaatacgcagaa
atgaaagaagaactacctacagttacttctgaaactaagcgtaaaaaattaactaagcgt
ttgaagttaatggaagcattcgttcaatctggcaaccgcccagagtggatggtaatgact
gtacttcctgtacttccacctgatctacgtcctttagtacctctagacggtggtcgtttt
gcgacttcagacctgaacgacttataccgtcgtgtaatcaaccgtaacaaccgtttgaag
cgtcttcttgacctagcggctccggacatcattgttcgcaacgaaaaacgtatgttacaa
gaagcggttgatgcgttattagataacggtcgtcgtggtcgtgcgattactggttctaat
aagcgtcctcttaagtctttggcagatatgatcaaaggtaagcaaggtcgtttccgtcag
aacctactaggtaagcgtgttgactactctggtcgttctgtaatcacagttggtcctact
cttaagttacaccaatgtggtctacctaagaaaatggcacttgagttattcaagccattt
atctacggcaaattagaaattcgtggcatggctacaaccatcaaagctgcgaagaaaatg
gtagaaagagaagcagcagaagtttgggatatcttagatgaagttatccgtgaacaccct
gtaatgcttaaccgtgcaccaacgcttcaccgtcttggtatccaagcgtttgaaccggta
cttatcgaaggtaaagcgattcagcttcacccactagtttgtgcggcatacaacgccgac
ttcgatggtgaccaaatggcggtacacgtacctctaacgctagaagcgcagttagaagcg
cgtgctcttatgatgtctacaaacaacatcctatctccagcgaatggtgagccaatcatc
gttccttcacaggacgttgtattaggtctttactacatgactcgtgatcgcattaacgcg
aaaggcgaaggtcaagtatttaaagatcctaaagaagcagaaaaagcatatcgttcagga
aatgcagatctacacgcacgcgttaaagtacgtatgcaagaagttactatcgccgctgac
ggtgagcgtacttctaagactgttatcaaagaaacaacggttggccgtgcgattttatca
atgattgcacctgaaggtttcccgtttgatctgatgaaccaagcgatcggtaagaaacaa
atctcaatgttaatcaatgagtgttaccgtcgactaggtatcaaagatactgtcgttttt
gctgaccaaatcatgtacacaggtttccactatgcgatgctagcgggtaactcaatcggt
atcgatgatatggttatcccacaagctaagtacgatcttatcgaagacgcgcaagcagaa
gttgctgagatccaagaccagttccaacaaggtcttgtaactgctggtgagaagtacaac
aaagtaatcgatatttggtctactgcgaacgaaaaagtttcgaaggcgatgatggacaac
ctttctactgaaacggtaattaaccgtgacggtgaagaggaaactcaaccttcattcaac
agcgtatttatgatggccgactctggtgctcgtggtagtgcggcacagattcgtcagcta
gctggtatgcgtggtctaatggctaagccagatggctcaatcatcgaaacaccaatcacg
gcaaacttccgtgaaggtctaaacgtacttcagtacttcatctcgactcacggtgctcgt
aaaggtctagccgataccgcacttaagacagcgaactcgggttacctaacacgtcgtctt
gttgatgttggtcaagatttggttgttaacgaagttgattgtggcacgaccgaaggtcta
gtcatgaagccactaattgaaggtggtgacgttgttgaaccacttcgtgaacgtgtacta
ggtcgtgtaacgctatctgacgttactgcacctaactctgacgaagtattagttgaagca
ggcgttatgcttgacgaaaaactgtgtgaccttttagaagcgcactcagttgacgaagtt
gaagttcgttcaatcattacttgtgacaacgactttggtgtttgtgcaatgtgttacggt
cgtgaccttgctcgtggtcaccttatcaaccaaggtgaagcagttggtgttatcgcagct
cagtcgattggtgagccaggtacacagcttacgatgcgtacgttccacatcggtggtgcg
gcatcacgaaacactgcagcaaacagcgtacaagttaagaacgacggtacaatccgtctt
cacaatgctaagcacgttacgaatgcagacggtaaactagtaattacctctcgttcagca
gaagtaacggtaatcgatgaccacggtcgtgagcgtgagcgttacaagctaccttacggt
gctgtaatgacgattgctgacggtgcagaggtaaaaggtaacgatactgttgctaactgg
gacccgcattcacacccaattatcgtagaacgtccagctaagattcaattctctgacgtt
gaagaagcgaacactgaggttcaaactgatgaacttacaggtctaactcgtaccgtagtt
aaagacttgtctttagcaaatgcgaaagagccaaagttaatcatggacgctggtgattca
ggtcttcaggaaatccgtctaccttcattcactacaattgaagtacgtgatggtgcagac
gtagttccgggtgacgtactagcgcgtatcccacaagaaggttcgaagactcgtgatatc
acgggtggtctacctcgagttgcggacttatttgaagcacgtaagcctaaagagcctgca
atccttgcagaaatctctggtgttgtaagcttcggtaaagaaacgaaaggtaagaagcgt
ctagtaatcactccagctgagggtgatgcgcacgaagagatgattcctaagtggcgtcag
cttaacgtgtttgaaggtgaatcagttgagcgcggcgaagttatcgctgacggtccagag
tcaccacatgacattctacgcttacgtggtattactgcattctcgaactacatcgtaaat
gaagttcaagaagtttaccgcttacagggtgtaaaaattaacgacaagcacatcgaagcg
atctgtcgtcagatgttacgtaaagcaatcatcacagatgctggccaatcagagttctta
gttggtgagcaagttgaagtatcaacagtgaaaattgcaaaccgtaagcttgcagctgaa
ggtaaagacttagttaaattcgatcgcgacttactaggtattactaaagcgtcacttgct
actgaatcattcatctctgcggcgtcgttccaagaaacaacgcgcgtattgactgaagca
gcggtaagcggcaagcgtgatgaattacgtggtctaaaagaaaacgtaatcgttggtcgt
ctgatccctgcaggtacaggtttcagctatcatcaagaaaaagcagctgcagcagccgct
tttgatgaagcagaagaaacagtatcagctgaagatgcagagcaagcattagcagacgcg
ttaaacgccgaagctgaataa
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