Psychroserpens sp. NJDZ02: E9099_02465
Help
Entry
E9099_02465 CDS
T05945
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psyn
Psychroserpens sp. NJDZ02
Pathway
psyn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psyn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E9099_02465 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psyn03021
]
E9099_02465 (rpoC)
03400 DNA repair and recombination proteins [BR:
psyn03400
]
E9099_02465 (rpoC)
Enzymes [BR:
psyn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E9099_02465 (rpoC)
Transcription machinery [BR:
psyn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E9099_02465 (rpoC)
DNA repair and recombination proteins [BR:
psyn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E9099_02465 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
Peptidase_M23
BSH_RND_rel
Motif
Other DBs
NCBI-ProteinID:
QCE40329
LinkDB
All DBs
Position
complement(542147..546448)
Genome browser
AA seq
1433 aa
AA seq
DB search
MAKKQDKNTVQRFNKISIGLASPESILAESRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKI
GYILGLPSKKLDMIIYYERYVVIQAGNAKNEEGEPLKKLDFLTEEEYLNILETLPQDNQY
LDDTDPSKFIAKMGAECLIDLLSRIDLDTLSYELRHKANTETSKQRKTEALKRLQVVEAL
RESNEHRENRPEWMIMKVVPIIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLV
EIKAPEVILRNEKRMLQESVDSLFDNTRKSSAVKTDSNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELRLFECGLPKNMAAELYKPFVIRKLIERGIVKTVKSAKKIIDK
REPVVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLACAAFNADFDG
DQMAVHLPLGPEAILECQLLMLASHNILNPANGAPVTVPSQDMVLGLYYMTKHRLSTPEV
KVRGEGLTFYSAEEVNIAYNEKRVELNAGIKVRAMDFNEAGELVPQIIETTVGRVLFNEN
VPAAAGYINEVLTKKSLRDIIGNILKVTSVPETADFLDAIKTLGYYFAFKGGLSFSLGDI
IIPPEKQSMIDAANEKVDGVTGNYNMGLITNNERYNQVIDIWTSTNAELTELSMKRIRED
QQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGSIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIVNSEDCGTLRGVEVSALKKND
EVVEKLEARIVGRISLNDVYDPLSEEILAEAGQLIDEEVAARIEKSPIDSVEVRSPLSCE
AKKGICAQCYGRNLATNKMVQRGEAVGVVAAQSIGEPGTQLTLRTFHVGGIAGNISEENK
LAVKFDGIAEIEDLKTVKGTNKEGEEEDIVISRTSELKLIDKKTGITLSTNNIPYGSTIL
VKNGDKLKSGDVVCQWDPYNGVIISEFAGKVRYENIEQGITYQVEIDEQTGFQEKVISES
RNKKLIPTLIVEDGKGEAIRSYNLPVGAHIMIDDGEKVKVGKILVKIPRKSSKAGDITGG
LPRVTELFEARNPSNPAVVSAIDGVVSFGKIKRGNREIIVESKLGEIKKYLVKLSSQILV
QENDFIKAGMPLSDGSVTPNDILNIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVVVR
QMMRKVRIIDSGDTIFLEDQLAHKSDFIEENDNIFGMKVVESAGDSSTLKEGQIISAFQL
RDENSILRREDKQLVVGRDAQPATATPILQGITRASLQTKSFISAASFQETTKVLNEAAV
AGKIDNLEGLKENVIVGHRIPAGTGMRTYENIIVGSKEEFDQMMKAKQEVNYN
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaaacaagataagaatacagtacagaggtttaacaaaatctctattggttta
gcatcaccagaatctattttagcagaatctagaggtgaagttttaaaaccagaaactatc
aattatcgtacacataaacctgaacgtgatggtttattctgtgagcgtatttttggtcct
gtaaaggattacgaatgtgcttgtggtaagtataagcgtattagatataagggtattgtt
tgcgaccgttgtggagttgaagttactgaaaagaaagtacgtcgtgatagagtaggacac
attaatttagtggttcctgtggctcatatctggtacttccgttctttaccaaacaaaatt
ggatacattttagggttaccatctaagaaattagatatgatcatttactacgaacgttat
gtagtaatccaagcaggtaatgctaaaaatgaagaaggagagcctttaaaaaaattagac
tttttaactgaagaagagtatctaaatatattagaaacacttcctcaagataatcaatat
ttagatgacacggacccaagcaagtttattgctaaaatgggtgctgagtgtttaatcgat
ctattatctcgcattgatttagatacgttatcatacgagttacgtcataaagcaaataca
gaaacgtctaaacaacgtaaaactgaggctttaaaacgtttacaagttgttgaagcatta
cgtgaatctaatgagcatagagagaatcgtccagaatggatgatcatgaaagttgtgcca
attataccaccagaattaagacctttagtgcctttagatggtggacgttttgcaacttca
gatttaaatgacctgtatcgtcgtgtaattatccgtaacaaccgtcttaaaagattagtt
gagataaaagcaccagaggtgattttacgtaatgaaaaacgtatgttacaagagtcagta
gattctttatttgataacacacgtaaatcatctgcagtaaaaacagattctaatagacca
ttaaaatcattatcagattcacttaaaggtaagcaaggacgtttccgtcaaaacttactt
ggtaagcgtgttgattattctgcgcgttctgtaattgtagttggaccagaacttagatta
tttgagtgtggtttacctaaaaatatggcggcagagctttacaaacctttcgtaattaga
aaactgattgaaagaggtattgtaaaaacagttaagtctgcaaagaaaattatagataaa
agagaaccagtagtttgggatattttagagaatgttttaaaaggacatccagtactttta
aatcgtgctcctacattacacagactaggtatacaagcatttcagcctaaattaattgaa
ggtaaagctatccaattacacccattagcatgtgcggcatttaatgccgattttgatggg
gatcaaatggcggttcacttaccattaggaccggaagctattttagagtgccaactgtta
atgttagcctctcataatatcttaaatccagcaaacggagctccggttactgtaccttct
caggatatggtacttggtctatattatatgactaagcacagattgtctacaccagaggta
aaagtaagaggtgaaggtttaacattctattctgcagaagaagtaaatattgcttataac
gagaagagagttgaattaaatgcagggattaaggttcgtgcaatggactttaatgaggct
ggagaattagtgcctcagattattgaaactaccgttggtcgtgttttatttaacgagaat
gtgccagcagccgcaggttacattaacgaagtattaactaagaaatctttaagagatatt
attggtaatattttaaaggtaactagtgtacctgaaactgcagatttcttggatgcaatt
aagactttagggtattacttcgcatttaaaggaggattatctttcagtttaggagatatt
attatcccaccagaaaaacaatctatgattgacgctgccaacgaaaaagttgatggtgtg
actggtaactataacatgggattaattacaaataacgaacgttataaccaagttattgat
atttggacgtctaccaatgcagaattgactgaattgtcaatgaaacgtattagagaagac
caacaaggatttaactcggtatatatgatgcttgattctggagcccgtggatctaaagaa
cagattcgtcagcttacaggtatgcgtggattaatggctaagcctaaaaaatctactgca
ggaggaggatcaattattgaaaatccaattttatctaactttaaggaaggactttcaatt
ttagaatacttcatatcaactcacggtgcgcgtaaaggacttgccgatacagcacttaaa
acagccgatgcaggttacttaacacgtcgtttagtagatgtatctcaagacgttattgta
aatagcgaagattgtggtacgttaagaggagtagaagtatctgcacttaagaaaaatgat
gaagttgttgagaaattagaagcacgtattgttggtcgtatttcattaaatgatgtttat
gatcctttaagtgaagaaattttagctgaagctggtcaattaattgatgaagaggtagca
gcaagaattgaaaaatcaccaattgattctgttgaagtacgttcaccattatcttgtgaa
gctaaaaaaggaatctgtgcacaatgttacggtcgtaacttagctaccaataaaatggta
caacgtggtgaagcagttggtgttgtagcagcgcaatctattggagagccagggacacag
ttaacacttcgtacgttccacgttggaggtattgcaggtaacatttctgaagaaaataaa
ttagcggttaagtttgatggtattgctgaaatcgaagatttaaaaacagttaaaggaaca
aataaggaaggtgaagaggaagatattgtaatctctcgtacgtcggaacttaaattaatt
gataagaaaacaggtattactttaagtacaaataatatcccttatggttctaccatttta
gttaaaaatggagataaacttaagtctggagatgttgtttgtcagtgggatccatataac
ggtgtaattatttctgagtttgcaggtaaagtgagatatgaaaatattgagcaaggtatt
acttaccaagtagaaattgatgagcaaacaggtttccaagaaaaagtaatttctgaatct
agaaacaaaaaattaataccaacacttattgttgaagatggtaaaggtgaagcaattcgt
tcttacaacttaccagtaggtgcgcacattatgattgatgatggagagaaagttaaggtt
ggaaaaatcttagttaaaatccctcgtaaatcttctaaggcaggtgatattacaggaggt
ttaccacgtgtaacagaattgtttgaagcgcgtaatccttctaatccagcagttgttagt
gcaattgatggtgtcgtatcttttggtaaaataaaaagaggtaatcgtgagattattgta
gaatctaaattaggtgaaatcaagaagtatttagtaaagttatctagccagattttggtt
caggaaaatgactttattaaagcgggaatgcctttatccgatggttctgtaacaccaaac
gatatccttaatattaaaggaccatctgcagtacaacaatacttagtaaacgaagtacag
gaagtatatcgtctacaaggtgtgaagattaatgataagcattttgaagttgttgtaaga
cagatgatgcgtaaagtaagaattattgattctggagatacaatcttcttagaagatcaa
ttagctcacaaatctgattttattgaagaaaatgataacatttttggaatgaaagtagtg
gagagtgctggagattcttctactttaaaagaaggacagattatatctgctttccaatta
agagatgaaaattcaattttacgtcgtgaagataagcaacttgtagtaggaagagacgcg
cagccagcaacagcaacgccaatcttacaaggtattacaagagcatctttacaaactaaa
tcgtttatatctgccgcttctttccaagaaacgactaaggtattaaatgaagcagcagta
gctggtaagatagataatcttgaaggtcttaaagaaaatgtaattgtaggacatcgtata
ccagcaggtacaggtatgagaacttacgagaatattatagtaggatctaaagaagaattt
gatcaaatgatgaaagcaaagcaagaagttaattataactaa
DBGET
integrated database retrieval system
