Psychroserpens sp. NJDZ02: E9099_07530
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Entry
E9099_07530 CDS
T05945
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
psyn
Psychroserpens sp. NJDZ02
Brite
KEGG Orthology (KO) [BR:
psyn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psyn03016
]
E9099_07530
Enzymes [BR:
psyn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
E9099_07530
Transfer RNA biogenesis [BR:
psyn03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
E9099_07530
Prokaryotic type
tRNA splicing ligases
E9099_07530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
ABC_toxin_N
Motif
Other DBs
NCBI-ProteinID:
QCE41269
LinkDB
All DBs
Position
complement(1724296..1725687)
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AA seq
463 aa
AA seq
DB search
MGKKLSGKDLIKLGFPKNNSINVTLGQINRYQKRVKKERILEDAKKVLLHPENYKGDGIW
GKIAESLLDPVNVTKQKLNTHRVPFQIYGEHEIDDQAKYQLYDALKLPIAVAGALMPDAH
VGYGLPIGGVLATKNAVIPYGVGVDIGCRMCLTIYPVKTSYLKGKQHQLETILSEHTKFG
MYETHNTKHDDPIFERDEFKTIPLVKRLKDKAFKQLGTSGGGNHFVEFGEVSITDVNNEW
DLPLGEYLGVLSHSGSRGLGANIAKHYTYLATKQCPLPKHVQHLAWLDLNTHDGQEYWLA
MNLAGDYAQACHDNIHKRIAKLLGERPIAKIANHHNFAWKENVNGEECIVHRKGATPAKK
GALGIIPGSMTAPGFIVRGLGNKDSLQSASHGAGRLLSRRQCKMTLTQSAVKKELQKHDV
SLIGGGIDEAPMAYKNIETVMQNQLELVEVVGKFTPKIVRMAR
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagaaattaagcggaaaagacttaatcaaattaggctttccaaaaaacaatagt
attaacgtgactttaggtcaaattaatcgctatcaaaaacgcgtaaagaaagaacgcata
ttagaagacgcaaaaaaagtattattacatccagaaaattataaaggtgatggcatttgg
ggaaaaatagcagaaagcctgctagacccagtaaacgtaacaaagcaaaaattaaacaca
catcgtgtgccctttcaaatttatggagagcatgagattgacgaccaagcaaaataccaa
ttgtacgatgctttaaaactacctattgcagttgccggcgctttaatgcccgatgctcat
gtgggttatggcttaccaattggtggtgttttagcaacaaaaaatgccgttattccttat
ggagtaggtgtagatattggctgcagaatgtgtttaactatttatccagtaaaaacctct
tatttaaaaggcaaacaacatcaattggagactattttatccgaacacacaaagtttgga
atgtacgaaacgcataatacaaaacacgatgatcctatttttgaacgtgacgaatttaaa
accattccgttagtaaaacgtttaaaagacaaagcctttaagcaattaggaacctctggc
ggagggaatcattttgtagagtttggagaggtaagtattacagatgttaataacgaatgg
gatttacctttaggagaatacctaggtgttttatcacatagtggttctcgtggtttaggt
gccaacattgctaaacactatacgtatttagcaacaaagcaatgtcctttaccaaaacat
gtgcaacatttagcctggctagacttaaatacacacgacggacaagaatactggttagct
atgaatttagctggagattatgcacaagcatgccatgacaacattcataaacgaatagcc
aaattattgggagaaagaccgattgccaaaatagccaatcatcacaattttgcttggaaa
gaaaacgtgaacggagaagaatgtatagtccacagaaaaggagcaacaccagctaaaaag
ggagcgctaggtattattcctggatctatgacagcaccagggtttatagtacgaggccta
ggtaataaagacagcttacaatcggcatcgcatggtgcgggcagactattatctagacga
caatgtaaaatgacattaacacaaagtgccgtaaaaaaagaattacaaaaacacgacgtc
tctttaattggcggtggtattgacgaagctccaatggcttataaaaacattgaaaccgtc
atgcaaaaccaattagaactagtggaagtcgttggcaagtttacgcctaaaattgtaaga
atggcaaggtaa
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