KEGG   Psychroserpens sp. NJDZ02: E9099_08710
Entry
E9099_08710       CDS       T05945                                 
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
psyn  Psychroserpens sp. NJDZ02
Pathway
psyn03030  DNA replication
psyn03430  Mismatch repair
psyn03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:psyn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    E9099_08710 (dnaE)
   03430 Mismatch repair
    E9099_08710 (dnaE)
   03440 Homologous recombination
    E9099_08710 (dnaE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:psyn03032]
    E9099_08710 (dnaE)
   03400 DNA repair and recombination proteins [BR:psyn03400]
    E9099_08710 (dnaE)
Enzymes [BR:psyn01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     E9099_08710 (dnaE)
DNA replication proteins [BR:psyn03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     E9099_08710 (dnaE)
DNA repair and recombination proteins [BR:psyn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     E9099_08710 (dnaE)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 RNase_T tRNA_anti-codon Intimin_C OB_MCM10
Other DBs
NCBI-ProteinID: QCE41495
LinkDB
Position
2000827..2005218
AA seq 1463 aa
MYLIFDTETTGLPKRWDAPITDTDNWPRCIQIAWQLHDEMGNCVEHEDYLVQPDGFNIPY
DAEKIHGISTELAQQQGVPLADVLEKFNTALGKAKFVVGQNVKFDLNIMGAEFVRGNVEN
PLQELPVLDTCTEQTAALCELPGGRYGRFKLPTLTELHQFLFDKPFGEAHNATADVEATT
RCFLELIRLKKYTKEQLDVAPEYFEQFNKENPQTIQLIGLKHINLKRESAKIQEKLQKQD
TNEISTAEIKENIKDLQTVDFVHLHNHSQFSVLQSTMSVADLITVAAGHGMPAVALTDHA
NMMGAFHFVNAANKHNKAAKAKIEEAAAAGTTTTAKEIKPIIGCEFFVCEDHTDKTRKDN
GYQIVLIAKNKNGYHNLAKLSSHAYVNGFYYIPRIDKKLIEEYKEDLICLTGNLYGEVPS
KILNVGENQAEEALIWWKETFGDDLYVELMRHDQEDENRVNPVLIKLARQHDVKLIASNN
TYYAKQSDANAHDILLCVKEGEKQATPIGRGRGYRYGLPNQEYYFKSGDQMKSLFKDVPE
SISNIQEVVDKIEGYQLARDVLLPAFDIPEQFASEEDKVDGGKRGENALLRHLTYVGAKK
RYGEELSDVVIERLDFELSVIEKTGYPGYFLIVEDFIREARKMDVSVGPGRGSAAGSVVA
YCLWITNIDPLLYNLLFERFLNPDRVSMPDIDIDFDDEGRSRVMDYVIEKYGSSQVAQII
TYGTMAAKSSIRDTARVLDLPLFDADRIAKLIPTMSKLGKIFGLTEKELGQKFRAEDLEK
INELLNISDGNDLSAETVNIARSLEGSVRNTGIHACGVIITPDDITKFVPVALAKDSDLY
VTQFDNSVVEDAGLLKMDFLGLKTLTLIKDTVKLVKAKHDILLDPDSFPLDDEKTYELFQ
RGETVGVFQYESPGMQKHLKDLKPTVFDDLIAMNALYRPGPMEYIPSFVRRKHGDEDIEY
DLPAMEEYLKETYGITVYQEQVMLLSQSLADFTKGEADVLRKAMGKKQIAVLDKMKPKFI
EQASAKGHDAKKLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLS
NNMNDIKQVTFFMDECKRMKLPVLGPDVNESYYKFSVNKDNAVRFGMGAIKGVGHGAVMT
IVNNRDEDGPYTSIFDLSKRIDLRAANKKAFENLALAGGFDELGDTHRAQYFFKDGSELT
FLEKAIKYGAKHQENENSAQVSMFGGDSDVQIEEPVIPECETWGTMEKLSREREVVGVYI
SGHPLDDFRTEMKSFCNGTISDFNDLSAHVNKEITFGGVVTDVQHRVSKQGKGWAMFTIE
DYTDTFEFRVFGEEYLKHRPFLLQNTFVHVKAFVREGWVNRDTGKKSDPRLQFNSFQLLH
DVMEKNVRKISIQLNIKELEAEKIRYLKELIAMHPGNHALNFLVYDNRDKIKLTMISRKQ
KIQVTNELLNELQEQQIHYLINQ
NT seq 4392 nt   +upstreamnt  +downstreamnt
atgtatttaatatttgataccgaaaccaccggattacctaaacgttgggatgcacctatt
actgataccgataattggcctagatgtatccaaattgcttggcaattgcatgacgagatg
ggtaattgtgtggagcatgaggattatttagtgcaaccggacggatttaatattccgtat
gatgcagagaaaatccatggtatttctacagaattagcacagcagcaaggagtcccttta
gcagacgttttagaaaagtttaatacggcattaggtaaagctaaatttgtggtgggtcag
aatgtgaaatttgacttgaatattatgggtgccgagtttgtgcgtggaaatgtagagaat
ccattgcaagaattaccggttttagatacgtgtacggagcagactgctgctttatgtgaa
ttacctggtggacgttatgggcgttttaaattaccaacgttaaccgagttgcaccagttt
ttgtttgataaaccttttggagaggcgcacaacgctactgccgatgtggaggcaacaaca
cgttgttttttagaattaatacgtttaaaaaaatatacaaaagaacagttagatgttgct
ccagaatactttgagcaatttaataaagagaatcctcaaacgattcagttaataggatta
aagcatattaacctaaaacgggaaagtgctaaaatccaagaaaaattacaaaagcaagat
actaacgagattagtactgcggagattaaagaaaatatcaaggatctacaaacggtagac
tttgtgcatttacataaccactctcagttttctgtattacagtcaacaatgagtgttgct
gatttgattacagttgctgcagggcatggtatgcctgctgtggcgttaacagatcatgct
aatatgatgggggcattccactttgtaaatgctgctaataaacataataaagctgcaaaa
gctaaaattgaagaagccgcagctgctggaaccacaacaactgcaaaagaaataaagcca
attattggttgtgagttttttgtttgtgaggatcacacggacaaaaccagaaaagacaac
gggtatcaaattgttttaattgcaaaaaacaaaaatggatatcacaaccttgcaaaatta
tcgtctcatgcttatgttaatgggttttattatataccaaggatagataaaaaacttatt
gaggagtataaagaagacttgatttgtttaacaggaaacttgtatggagaggttccaagt
aagattttaaatgttggagaaaatcaggcagaagaagcgttaatttggtggaaagaaaca
tttggtgatgatttgtatgtagaactgatgcgacacgatcaggaagatgaaaaccgtgtt
aaccctgttttaataaaattagcaagacaacatgatgttaagttaatagcgtctaacaat
acctattatgctaagcagagtgatgccaatgcgcatgatattttattgtgtgtaaaagaa
ggtgaaaaacaagccacaccaattggtcgtggtagagggtatcgttatggattgcctaac
caagaatactactttaaatctggagatcagatgaaaagtttgtttaaggatgtgcctgaa
tccatttcgaatatccaagaagtggttgataagattgaagggtatcaattggctagggat
gtattattgcctgcgtttgatattccggaacagtttgcaagtgaagaggataaagttgat
ggaggaaaacgtggggagaatgcccttttaaggcatttaacttatgtgggtgctaaaaaa
cgatatggagaagagttgtccgatgttgttattgaacgattggattttgagctaagcgtt
attgagaaaacggggtatcctggatatttcttgattgtagaggattttatacgcgaagct
agaaaaatggacgtttctgtaggtccagggcgtggatcggcagcaggatctgtagttgcc
tattgtttatggattaccaatattgatcccttattgtataacttactttttgagcgtttc
ctgaatccggatcgtgtaagtatgcccgatattgatattgattttgatgacgaaggccga
tctcgtgttatggattacgttatcgaaaagtatggaagtagtcaagtggcgcagattatt
acctacggtactatggctgcaaaatcttcgattagagatacggcacgtgtattagattta
cctttgtttgatgcagataggattgcaaaactgattcctacaatgtctaagttgggtaag
attttcggtttaaccgaaaaagaattagggcaaaagtttagagctgaagatttagagaaa
attaacgagcttttaaatatttcggatggaaatgatttgtctgccgaaaccgtaaatatt
gcacgatcattagaaggttctgttcgaaacacagggatacatgcctgtggtgtaattatt
acgccagatgatattactaagttcgtaccagtggctttggcaaaagattcagatttgtat
gtcacacagtttgataactctgtggtggaggatgcaggactgttaaagatggatttcttg
ggtctgaaaacgctaacgcttattaaagacactgtaaaattagttaaagctaaacatgat
atattattagatccagatagttttcctctggatgatgaaaagacttacgagttgtttcaa
cgtggagaaacagttggtgtatttcaatatgaatctcctggaatgcagaagcatttaaaa
gatcttaaacctactgtttttgacgatttaattgccatgaatgcactgtacagacctggt
ccaatggaatacataccaagttttgtacgtagaaagcatggtgacgaggatattgagtac
gatttaccagcaatggaagagtacttaaaggaaacctacggaattacagtataccaagag
caggtaatgctactgtcacagtctttagcagattttacaaagggtgaagccgatgtactg
cgtaaggcgatgggtaaaaagcaaattgcggttttggataaaatgaaaccaaaatttatc
gagcaagccagtgctaaagggcatgatgctaaaaagcttgagaaaatttggaaggattgg
gaagcctttgctagttacgcctttaacaaatcgcactcgacgtgttatgcgtggattgct
tatcaaacggcgtatctaaaggcgcattatccagccgaatatatggctgcggtattgtcc
aataacatgaatgacattaaacaggtgaccttttttatggacgagtgtaagcgcatgaaa
ctaccggtacttggaccagatgtaaatgaatcttattataagttttctgtaaacaaggac
aatgcggtgcgttttggtatgggagccataaaaggagttgggcatggcgctgtaatgact
attgttaataatagagatgaagatgggccatatacttcgatatttgatttgtcaaaacgt
attgatttacgtgccgctaacaaaaaggcatttgaaaatttagcattagcaggtggtttt
gatgagttgggtgatacacatcgtgcgcaatacttttttaaagatggaagcgaattaacc
tttttagaaaaggctattaaatatggtgcaaagcatcaagaaaatgaaaactcggcacaa
gtcagtatgtttggtggtgatagtgatgtgcagattgaagaacctgtgattcctgaatgt
gaaacttggggaaccatggaaaaactatctcgagaacgtgaggtggttggagtttatatt
tcaggacatcctttagatgattttagaacagagatgaaatcgttttgtaatggaaccatt
tcagattttaatgacttaagcgctcatgttaataaagaaattacttttggaggtgttgtt
acagatgtgcaacatcgtgtgagtaagcaaggtaaaggttgggcaatgtttaccattgaa
gattatacagatacgtttgaatttagggtttttggtgaagagtatctaaaacaccgtcca
tttttattacaaaacacatttgtacacgttaaggcttttgttagagaaggttgggtaaat
cgtgataccggtaaaaagagtgatccaagattgcaatttaatagctttcagttattgcac
gatgtcatggagaaaaatgttagaaaaatctcgattcaattaaatattaaagagcttgaa
gctgaaaaaattagatatctaaaggagttgatagcaatgcatcctggtaatcatgcgctt
aactttttggtgtacgataatagagataaaattaaattaaccatgattagtcgaaagcaa
aaaatacaagtgaccaatgagttgctgaatgaattgcaggagcaacagattcattatttg
attaatcaataa

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