Psychroserpens sp. NJDZ02: E9099_10515
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Entry
E9099_10515 CDS
T05945
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psyn
Psychroserpens sp. NJDZ02
Pathway
psyn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psyn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E9099_10515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psyn03019
]
E9099_10515
Enzymes [BR:
psyn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E9099_10515
Messenger RNA biogenesis [BR:
psyn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E9099_10515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Shikimate_DH
AAA_19
P-loop_SecA
Fe-ADH
DUF7115
AAA_22
Thiamine_BP
Motif
Other DBs
NCBI-ProteinID:
QCE41823
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All DBs
Position
2426946..2428244
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AA seq
432 aa
AA seq
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MSFQSLGLSEALLKAISKKGYTTPSPIQQKAIPPVLEGHDVLASAQTGTGKTAGFTLPLL
HILSENPKEKYRPIRALILTPTRELAAQVYANVKEYSEFLNLRSAVIFGGVNQKPQAATI
RQGIDVLVATPGRLIDLESQGLLSLKRVEIFVLDEADRMLDMGFLRDIERVMKLMPDKRQ
NLMFSATFSKEIRKLANGILNHPVQVEATPENTTVEAITQKVFRVAKAKKTDLIIKLITD
GNWKQVLVFNRTKHGANKLVEKMIKAGIKAAAIHGNKSQGARTKALAGFKSGSISVLVAT
DIAARGLDIPLLPHVINFEIPNISEDYVHRIGRTGRAGANGEAISLVSADETTFLRDIQK
LIGMKLPVEIMEGFEPDPNASTAPIKPGQNRRQQPRNDKPKGEKTKSKGNSSSNSGGRNR
TKSKSRNNDSRR
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttcaatctttaggcctatctgaagccttactaaaagcaattagtaaaaaagga
tacactacaccaagtccaattcaacaaaaagccatccctccagtattggaagggcatgac
gtattggcttcggcacaaacaggaacaggtaaaacagcaggttttacattaccgctgtta
catatcttatcggaaaacccgaaggaaaagtacagacctatacgtgcgttaattttaaca
ccaacacgagagttggctgcacaagtgtatgctaacgtaaaagagtatagcgagttttta
aacttgcgtagtgctgtaatttttggaggtgttaatcaaaaaccacaagcagctactatc
cgtcagggtattgatgtattagtggctacgccaggacgtttgatagatttagaaagtcaa
ggtttattgtctttaaaacgtgtcgagatttttgttttagatgaagcagaccgtatgtta
gatatggggtttttacgtgatatagaacgtgtaatgaaactaatgccagacaagcgtcaa
aatttaatgttctctgcaactttttctaaagagattagaaaattagcaaacgggatttta
aatcatccggtgcaagttgaagcaacaccagaaaacaccacagttgaagctattacccaa
aaagtatttagagtagccaaagctaaaaaaacagatttaattatcaagttaattacggat
ggtaattggaagcaagtattggtttttaaccgtactaagcatggtgcgaataaattagtg
gaaaaaatgattaaagcaggcattaaagctgctgcaatccatggaaataaaagtcaaggg
gcacgtacaaaagctttagcaggttttaaaagtggaagtattagtgtgttagtcgcaaca
gatattgctgcacgtggtttggacatccctttattacctcacgttattaattttgaaatt
ccaaatatttctgaagattatgtacaccgtattggtcgtaccggtcgtgcaggagctaat
ggtgaagcgataagtttagtaagtgcagacgagactacttttttacgtgacattcaaaaa
ttaattggtatgaaattgcctgtagaaataatggaaggttttgaaccagatccaaacgct
tctacagcgccaattaaaccaggacagaatagaagacaacaacctagaaatgataagcct
aaaggcgaaaagaccaaatctaaggggaattcgtcatcaaattctggtggtcgtaataga
actaagtctaaaagtagaaataacgatagtagacgctaa
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