Psychroserpens sp. NJDZ02: E9099_18135
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Entry
E9099_18135 CDS
T05945
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psyn
Psychroserpens sp. NJDZ02
Pathway
psyn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psyn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E9099_18135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psyn03019
]
E9099_18135
Enzymes [BR:
psyn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E9099_18135
Messenger RNA biogenesis [BR:
psyn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E9099_18135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Utp25_C
Helicase_C_2
AAA_19
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
QCE43254
LinkDB
All DBs
Position
4115762..4117114
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AA seq
450 aa
AA seq
DB search
MSFRDLNLNTPLYNAIDDLGFTQPTPIQAEAFNVVASGKDMVGIAQTGTGKTFAYMLPIL
KNLKFSKQENPRVLILVPTRELVVQVVDEIEKLAKYINTRVLGVYGGTNINTQKQAVAQG
QDIIVATPGRLYDLAVSRVLQLKSLERLVIDEVDVMLDLGFRHQLINIFDILPERRQNIM
FSATMTDDVDELITDFFTAPQKVSIAISGTPLENISQTKYSVPNYYTKLNLLVHLFQDAE
TYNKVLVFVSNKRMADRLFEALDEFFNEELCVIHSNKTQNYRLRSIEQFREGVNRILVAT
DVMARGLDIDNVSHVINFDTPDYPENYMHRIGRTGRAEREGQAIVFSTVKEQVGLEKIET
LMQMEIPELEIPEAVVISTELIEEERTVIKERNNPTKRNDIDAPGPAFHEKSEKNSKENL
GGSYKFKIAAKYKKPKTRGDKNYNKRNNKK
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
ttgagctttagagatttaaatttaaatacccctttatataacgcaattgacgacctaggt
tttacacagccaactccaatacaagcagaagcttttaatgtagttgcaagtggtaaagat
atggttggtattgcacaaactggtacaggtaaaacttttgcctatatgttaccaatactt
aaaaacctaaaattttctaagcaagaaaaccctcgtgttttaattttagtccctactaga
gaattagtagtgcaagtagttgacgaaattgaaaagttagcaaaatatataaatacacgt
gtgcttggtgtttatggaggtacaaacattaacacgcaaaaacaagcagttgctcaaggt
caagatattattgttgcaacaccaggacgtttatacgatttagcggttagtcgcgtacta
caacttaagtctttagagcgtttagttattgatgaagtagatgttatgttggatttaggg
ttcagacaccaattaattaacatttttgatatccttccagaacgtagacaaaacattatg
ttttctgcaacaatgacggatgatgttgacgaattaatcactgattttttcacggcacca
caaaaagtatctattgctatttctggtacacctttagaaaacatatcacaaacaaaatat
agtgttcctaattattatactaaacttaatttattagtacacttatttcaggatgccgaa
acctacaacaaagtattagtttttgtatccaataaacgtatggccgatcggctttttgaa
gctttagacgagttttttaatgaagaattatgtgttatacactctaacaaaactcagaat
tacagattacgtagtatcgagcagtttagagaaggtgttaaccgtattttagtagcaacg
gacgttatggctcgtggtttagatatcgataatgtatcacacgttattaactttgatacg
cctgattatccagaaaactacatgcacagaataggtagaactggtcgtgcggaacgcgaa
gggcaagctattgtattttctacagtaaaagaacaagttggtcttgaaaagatagagacg
ttaatgcaaatggaaattcctgaattggaaatcccagaagctgttgttatttctactgag
ttgattgaggaagaacgcactgtaattaaagaacgtaacaatccaaccaaacgaaacgat
attgatgctcctggacctgcttttcatgaaaaatcagaaaaaaacagtaaagaaaattta
ggtggtagttacaaattcaaaattgctgccaaatacaaaaagcctaaaactagaggtgat
aaaaattacaataagcgtaacaataagaaataa
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