Psychrobacillus glaciei: PB01_00300
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Entry
PB01_00300 CDS
T06231
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psyo
Psychrobacillus glaciei
Pathway
psyo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psyo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PB01_00300 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psyo03400
]
PB01_00300 (mfd)
Enzymes [BR:
psyo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PB01_00300 (mfd)
DNA repair and recombination proteins [BR:
psyo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PB01_00300 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
AAA_22
DUF1474
DUF5398
UB2H
Motif
Other DBs
NCBI-ProteinID:
QFF97395
UniProt:
A0A5J6SHN2
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All DBs
Position
61274..64807
Genome browser
AA seq
1177 aa
AA seq
DB search
MELLSNLLMDDTHMQKLVKELERGQDQQLITGLSGSARAVFIKMLYRARRKAVLIITPNL
LHAQKLTEDLVKLVGDDLVRLYPADELIAADISVTSPELRAQRIETLDHMLTKRNGVYIV
PVAGLKKHMPTVTDWKQSTVSIAEGEEVELEVLLQNLVNMGYVRQPMVTAPGEFALRGGI
VDIYPLYLEHPIRIELFDTEIDSIRTFSAEDQRSLDKLKEIRILPATEYVLTETKKKLLA
HKLEQSLAESLKKVKIPEIKDQFYQNIQHDIELLNQGEQPKQFMKYVSLLEDGNSFLGHY
FNRDGMVLFDELGRIQEVTETLEREEKDWFLALLEEGKTVHDVKPSLSLKEIIQMLPNEK
LYFSLFSRTFSGITIKKNTTFSCKPMQNFHGQMHLLKNELERFTNGKFRVVILADGKDRA
QKIHTVLEDYEIVSKIGASGEDLQKSGIFIVDGDLEAGFELPLQRIAVITDAELFKQKHK
KKARAQKVSNAERIKSYSEIKPGDNIVHIHHGIGKYIGIETLLVNGIHKDYLHIRYRGED
KLFVPVDQIDLIQKYVASGERDPKLHKLGGADWKKTKTKVSAAIQDIADELLKLYAKRES
EVGYAFEPDGEMQQSFEAAFPYEETEDQLRSIEEVKRDMEKSRPMDRLICGDVGYGKTEV
AIRAAFKAVMEGKQVAFLCPTTILAQQHYETMLERFQDFPIEVGLLSRFRSKKQQTETIS
DLKKGLVDVVVGTHRILSKDVVYHDLGLLVVDEEQRFGVKHKEKIKQLKTNVDVLTLTAT
PIPRTLHMSMIGVRDLSVIETPPKNRFPVQTYVMEFNGSLVRESIERELARGGQAFYLYN
RVEDITRKVDEIQMLVPGARVGFAHGQMPETELESVIISFLEGEYDVLVTTTIIETGIDI
PNVNTLIIHDADKMGLSQLYQLRGRVGRSNRVAYAYLMHQRDKVLTDVAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNLLGSQQHGFIDSVGFDLYTQMLEEAIEEKRTGIKKEDLQD
LEIVLSTEAYISDDYIPDGYQKIQMYKRVKAMEKEEEYLDILDELQDRFGEIPLEADKLL
RIARLKIWGKDVGVESIKEINKLVSIRFSKEGTKNINGALLVEKSMKYGRAVGFSMDDAN
LVITIDERKTGKFNPFDILEEIMRLLPEAKKETVEVK
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggaacttttaagcaatttattaatggatgatacacatatgcaaaaactagtgaaagag
ttggagcgcggtcaagatcaacaactaataacaggtctttcgggtagcgcaagagcagta
tttattaaaatgttatatagagcgcgcagaaaagctgttcttattattactcctaattta
cttcacgctcaaaagctaacagaggatttggtaaagcttgttggggatgacttggtgcgt
ttgtatcctgcagatgagcttatagccgctgacatttcggtaacaagtccagagctacgt
gcacagcgaattgaaacgttagatcatatgttaacgaaaagaaatggcgtttatattgtg
cctgtcgcaggtctgaaaaaacatatgcctactgtgacagactggaagcaaagtactgtt
tctattgcagaaggtgaagaagtagagctagaagtacttctacaaaacttagtaaatatg
ggatacgtacgacaacctatggttactgcaccaggcgaattcgctctaagaggtggcatt
gtggacatttatccactctatctagagcatcctatccgtattgaattatttgatacggaa
atagactcaattcgtacattttcagcagaagaccaacgttctttagataaattaaaggaa
attcgtattttaccagcaacagaatacgtcctaactgaaacgaagaagaaactacttgcg
cataaattggaacagtcgttagcagaaagtttaaaaaaagtaaaaatacccgaaataaaa
gatcaattttatcaaaatattcaacatgatattgaacttttaaatcaaggcgagcagcca
aaacaatttatgaagtacgtttcactattagaagatggtaatagcttcttaggccactat
ttcaatcgagatgggatggttttatttgatgaacttggtagaattcaagaagttacagaa
acgttagaacgagaagaaaaagattggtttttagctttgttagaagaaggaaaaacagta
catgatgtaaaaccatctttgagcttgaaagaaattattcaaatgcttccgaacgaaaaa
ttgtatttctcgttattttcacgcacattttcagggataaccatcaaaaagaatactact
ttctcttgtaagccaatgcaaaattttcatgggcaaatgcatttattgaaaaatgaactt
gagcggtttactaatggaaagtttcgtgtcgttattcttgctgatgggaaggatcgcgca
caaaagattcatacggttcttgaagattatgaaatagtttcgaagattggtgcttcagga
gaggacttgcagaagtcggggatttttatagtagatggagatttagaagctggtttcgaa
ttgcctctccagcgtattgcggtcattacagatgcagaattatttaaacaaaaacataag
aaaaaagcgagggctcaaaaagtatccaatgcagagcgtatcaaaagctattctgaaata
aaacctggcgataatatcgtacatattcatcatgggatagggaaatatataggaatagaa
acgctcttagtaaacggaattcataaagattatttgcatatacgttatcgcggtgaggat
aaattatttgttcccgtcgatcaaattgacctaattcaaaaatatgtcgcttccggcgaa
agagatccaaagctacataaattaggtggagcagattggaaaaaaacaaaaacgaaggta
tctgctgctattcaagatatagcagatgagttgttgaaactctacgcgaaacgggagtcc
gaagttggttacgctttcgagccagatggtgaaatgcaacaatcatttgaagcggctttc
ccatatgaggaaacagaagatcaacttcgttcgattgaagaagtgaagcgggatatggaa
aagtcacgtccaatggatcgtcttatttgtggagatgtaggatatggaaaaacagaggtc
gcaataagagcggcattcaaagcggtaatggaagggaaacaagtagcattcctttgtccg
acaaccattcttgctcaacagcattacgaaactatgctagaacgatttcaagactttcca
attgaagttggtttgcttagtcgtttccgttccaaaaaacagcaaacggagacgattagt
gacttaaaaaagggactagtagatgtagtagtaggtacacatcgcatattatcaaaggat
gttgtctatcacgatttaggacttttggtcgtcgatgaagaacaacgttttggggtaaag
cataaagaaaaaattaaacaactgaaaacaaacgtagatgtccttacactaactgctacg
cctattcctcggacattgcatatgtcgatgataggtgtaagagatctatcggtcattgag
acaccaccaaaaaaccgttttccagttcaaacatatgtcatggaatttaacggatcactt
gtacgggagtcgattgaacgagaactagcaaggggaggacaggcattttatctatataat
cgagtagaagacataactcgaaaagtagatgaaattcaaatgttggtccctggagctaga
gtaggttttgctcatggtcagatgcccgaaacggaacttgaatcggtcattattagcttt
ttagaaggcgagtatgatgtcctcgtaacaacgaccattattgaaactggtattgatata
ccaaatgtaaatacacttatcattcatgatgcagataaaatgggactatctcagctttat
caattacgggggcgtgtaggacgatcaaatcgagttgcatacgcctatttaatgcatcaa
agagataaggttttaacagatgttgcagaaaaaagattacaggcaattaaagaatttacg
gagcttggatctggatttaaaatcgcaatgcgtgatctttccattcgaggagcaggaaat
ctattaggttcacagcaacacggattcattgattcggttggttttgatttatatacacaa
atgttagaagaggctattgaagagaagcgaacgggcatcaaaaaagaagatctgcaagac
ttagaaattgttttatcaacggaagcctatatttcagacgattatataccagatggatat
caaaaaattcaaatgtataaacgtgttaaagccatggagaaagaagaagaatatttagat
atcttagatgaactacaagatcgttttggagaaattcctctggaagcagacaaattatta
cgaattgctcgcctgaaaatttggggtaaagatgtaggggtagaatctattaaggaaata
aacaagcttgtatctattcgttttagtaaagagggtacaaaaaatataaatggtgctttg
cttgtggaaaagtccatgaagtatggacgtgcggtgggattcagtatggatgatgcgaat
ttagtcattacaatagatgaaagaaaaacagggaagtttaatccatttgatatcttggaa
gaaataatgagattattgcctgaagcaaaaaaagaaacggtagaagtgaaataa
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