KEGG   Psychrobacillus glaciei: PB01_06935
Entry
PB01_06935        CDS       T06231                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
psyo  Psychrobacillus glaciei
Pathway
psyo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:psyo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PB01_06935
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:psyo03019]
    PB01_06935
Messenger RNA biogenesis [BR:psyo03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     PB01_06935
SSDB
Motif
Pfam: RNase_J_C RNase_J_b_CASP RMMBL Lactamase_B Lactamase_B_2 Gemini_AL1_M Imm7 DUF2187
Other DBs
NCBI-ProteinID: QFF98586
UniProt: A0A5J6SKR8
LinkDB
Position
1547461..1549128
AA seq 555 aa
MVKVKNELIRIIPLGGVGEIGKAMYVVEIDEEIFVVDSGLMFPENEMLGIDIVIPDITYL
EENKNRVKGIFLTHGHEDSIGSIAYLLQKIQAPVYGSKLTIALAKTHLKALPTKQSVKYF
EVTNKSRMNFQSTYVTFFHTTHSIPDSFGIVFHTSEGAIVHTGEFKFDQSAKGKYRPDIA
KIASLGEEGVFILLSDSTEAERPGYTTSEAVIENQLLETFHAARGRILVSLYASNFIRIQ
QVFDKAKETGKKVAIAGKSLENIFEIGLDLGYFTVDEETIIPIREISKYNDDEIVVILSG
NQGEPLEALEKIVRKHHKDIKIKDTDTVLITFTPSPGMEVSMFQTMNQLAKAGAKVLTSS
KNVHVSGHGSQEDLKMMLNLTRPTYFIPIQGEYRMLIAHSKLAQAIGMTKSEIFIADKGD
IVEYKNGKMRMSGRVQAGNVLIDGIGIGDVGNIVLRDRKLLSQDGIFIVVVTLNRAQKKI
ASGPEILSRGFVYVRESEALMDESAKLVRTIVEKYVNKETFEWTNIKQEIRDTLNSYLFQ
QTKRRPMIIPIIMEY
NT seq 1668 nt   +upstreamnt  +downstreamnt
ttggtaaaagtaaaaaatgaacttattcgaatcatccccctcggtggagtaggggaaatc
ggaaaagcaatgtacgtagtagaaattgacgaagaaatatttgtagtagacagtggacta
atgttcccagaaaatgaaatgctgggtatagatattgtcataccggatataacttactta
gaagaaaataaaaatcgcgtaaaaggaatatttttgacacatggacacgaagattccata
ggatctattgcttatttattacaaaaaattcaagcccctgtgtatggttcaaagttaacg
attgcactagctaagacgcatttaaaagcgctacctacaaagcaatcagttaaatatttt
gaggttacaaataaaagccggatgaatttccagagcacttatgtgacattctttcacaca
acacatagtattccagattcatttggtattgtatttcatacttcagaaggtgccattgtg
catacgggagaatttaaattcgaccaatctgcaaaaggaaaataccgtccggatatcgcg
aaaattgctagcctaggtgaagaaggcgtatttatattactatcggattcaacggaagca
gaaagaccaggatatacgacatcagaggcagttattgaaaaccaattattagaaacattc
cacgctgctcgaggtcgtattctcgtgtctttatatgcttctaactttattcgaattcaa
caagtattcgataaagcaaaagagacaggtaaaaaggtagcaattgcagggaaaagctta
gaaaatatttttgaaattggattagatttaggttactttactgttgatgaagaaacaatt
attcctattagagaaatatcaaagtacaatgatgatgaaattgtagtcatcttatctggt
aatcaaggagagccgctggaagcgttagaaaaaatagttcgcaaacaccataaagatatt
aaaataaaagatacagatacagtattaatcacgtttacaccatcacctggaatggaagta
agcatgtttcaaacaatgaaccaacttgcaaaggctggggcgaaagtactgacatccagc
aaaaatgttcatgtatctggacatggtagccaagaagatttaaaaatgatgttaaactta
acaagaccaacctattttattccaattcaaggcgaatatcgtatgttaattgcacactca
aaactagctcaagctataggcatgacgaaatctgaaatttttattgcggacaagggtgat
attgttgaatataaaaatggcaagatgagaatgagtggaagggtacaggctgggaatgta
ttaattgatgggattggcataggtgatgtaggtaatattgtacttcgtgatcgtaagctg
ctctcgcaagatggaatttttatagtagtagtgaccctaaatcgtgcgcaaaagaaaatt
gcatctggcccagaaattctttcgagaggattcgtttacgtaagggaatctgaagcgtta
atggatgaatcagctaagcttgtcagaacgattgttgaaaaatatgtgaataaagaaacg
tttgaatggacaaacattaaacaagaaatccgcgatacgctaaactcatatttattccaa
caaacaaaaagacgtccaatgatcatcccgattattatggaatattaa

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