Psychrobacillus glaciei: PB01_06935
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Entry
PB01_06935 CDS
T06231
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
psyo
Psychrobacillus glaciei
Pathway
psyo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psyo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PB01_06935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psyo03019
]
PB01_06935
Messenger RNA biogenesis [BR:
psyo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PB01_06935
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
Gemini_AL1_M
Imm7
DUF2187
Motif
Other DBs
NCBI-ProteinID:
QFF98586
UniProt:
A0A5J6SKR8
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Position
1547461..1549128
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AA seq
555 aa
AA seq
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MVKVKNELIRIIPLGGVGEIGKAMYVVEIDEEIFVVDSGLMFPENEMLGIDIVIPDITYL
EENKNRVKGIFLTHGHEDSIGSIAYLLQKIQAPVYGSKLTIALAKTHLKALPTKQSVKYF
EVTNKSRMNFQSTYVTFFHTTHSIPDSFGIVFHTSEGAIVHTGEFKFDQSAKGKYRPDIA
KIASLGEEGVFILLSDSTEAERPGYTTSEAVIENQLLETFHAARGRILVSLYASNFIRIQ
QVFDKAKETGKKVAIAGKSLENIFEIGLDLGYFTVDEETIIPIREISKYNDDEIVVILSG
NQGEPLEALEKIVRKHHKDIKIKDTDTVLITFTPSPGMEVSMFQTMNQLAKAGAKVLTSS
KNVHVSGHGSQEDLKMMLNLTRPTYFIPIQGEYRMLIAHSKLAQAIGMTKSEIFIADKGD
IVEYKNGKMRMSGRVQAGNVLIDGIGIGDVGNIVLRDRKLLSQDGIFIVVVTLNRAQKKI
ASGPEILSRGFVYVRESEALMDESAKLVRTIVEKYVNKETFEWTNIKQEIRDTLNSYLFQ
QTKRRPMIIPIIMEY
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
ttggtaaaagtaaaaaatgaacttattcgaatcatccccctcggtggagtaggggaaatc
ggaaaagcaatgtacgtagtagaaattgacgaagaaatatttgtagtagacagtggacta
atgttcccagaaaatgaaatgctgggtatagatattgtcataccggatataacttactta
gaagaaaataaaaatcgcgtaaaaggaatatttttgacacatggacacgaagattccata
ggatctattgcttatttattacaaaaaattcaagcccctgtgtatggttcaaagttaacg
attgcactagctaagacgcatttaaaagcgctacctacaaagcaatcagttaaatatttt
gaggttacaaataaaagccggatgaatttccagagcacttatgtgacattctttcacaca
acacatagtattccagattcatttggtattgtatttcatacttcagaaggtgccattgtg
catacgggagaatttaaattcgaccaatctgcaaaaggaaaataccgtccggatatcgcg
aaaattgctagcctaggtgaagaaggcgtatttatattactatcggattcaacggaagca
gaaagaccaggatatacgacatcagaggcagttattgaaaaccaattattagaaacattc
cacgctgctcgaggtcgtattctcgtgtctttatatgcttctaactttattcgaattcaa
caagtattcgataaagcaaaagagacaggtaaaaaggtagcaattgcagggaaaagctta
gaaaatatttttgaaattggattagatttaggttactttactgttgatgaagaaacaatt
attcctattagagaaatatcaaagtacaatgatgatgaaattgtagtcatcttatctggt
aatcaaggagagccgctggaagcgttagaaaaaatagttcgcaaacaccataaagatatt
aaaataaaagatacagatacagtattaatcacgtttacaccatcacctggaatggaagta
agcatgtttcaaacaatgaaccaacttgcaaaggctggggcgaaagtactgacatccagc
aaaaatgttcatgtatctggacatggtagccaagaagatttaaaaatgatgttaaactta
acaagaccaacctattttattccaattcaaggcgaatatcgtatgttaattgcacactca
aaactagctcaagctataggcatgacgaaatctgaaatttttattgcggacaagggtgat
attgttgaatataaaaatggcaagatgagaatgagtggaagggtacaggctgggaatgta
ttaattgatgggattggcataggtgatgtaggtaatattgtacttcgtgatcgtaagctg
ctctcgcaagatggaatttttatagtagtagtgaccctaaatcgtgcgcaaaagaaaatt
gcatctggcccagaaattctttcgagaggattcgtttacgtaagggaatctgaagcgtta
atggatgaatcagctaagcttgtcagaacgattgttgaaaaatatgtgaataaagaaacg
tttgaatggacaaacattaaacaagaaatccgcgatacgctaaactcatatttattccaa
caaacaaaaagacgtccaatgatcatcccgattattatggaatattaa
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