Psychrobacillus glaciei: PB01_12980
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Entry
PB01_12980 CDS
T06231
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
psyo
Psychrobacillus glaciei
Pathway
psyo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
psyo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PB01_12980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psyo03400
]
PB01_12980
Enzymes [BR:
psyo01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
PB01_12980
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
PB01_12980
DNA repair and recombination proteins [BR:
psyo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PB01_12980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
QFF99675
UniProt:
A0A5J6SP27
LinkDB
All DBs
Position
complement(2749220..2750092)
Genome browser
AA seq
290 aa
AA seq
DB search
MPELPEVEGLVRSLKPIVTGKTILLVDVSETIITSKANGKEAILKGLDVEYFCKVLQHMT
IESIERRSKYIYFHLVKNQLPYLLVSHLGMSGAWFYVRGLHEIVEDKFKRHTHVILHLVG
GDMLVYADIRRFGELRFLKNEEDYPPLLLMAPEPFDQNALDHYLAMSSLPKYENKAIKEF
IMDGHVVSGCGNIYATEALFRMRIHPGRKVKRISKERKIQLFNEIVIVLLDSIEQGGSSI
SDYRKINGESGNMQNRLQMYGKKKCPICNKRTLQQTIGGRTSTYCGTCQR
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atgccagaattaccagaggtagaaggattagttcgttcgttaaaaccaatcgttacaggt
aaaacaattctattagtggacgtttcagaaacgattattacttctaaagcaaatggaaaa
gaagcgattttaaaaggattagatgtagaatatttttgtaaagtattacaacatatgacg
attgaaagtatcgaaagacggtccaaatatatttattttcatttagtgaaaaatcaacta
ccctacctactcgtttctcatcttggtatgtcaggcgcttggttttatgtgagaggctta
catgagatagtagaggataaatttaagcgacacacgcatgtcatccttcatttagttggg
ggggacatgctcgtttatgcagatattcgtcgtttcggagagttgcgttttctaaagaat
gaagaagattatccgcctttattactaatggctcctgagccttttgaccaaaatgctttg
gatcattatttagctatgagtagcttgccgaagtatgaaaataaagcgattaaagaattt
attatggacggtcatgtagtttcaggatgtgggaatatttatgcaacagaagcattgttc
cgaatgcgaattcatccaggacgaaaagtaaaaagaattagtaaagaacgcaaaatacaa
ttattcaatgaaattgttatcgttctattagatagtattgagcaaggaggaagtagcatc
tctgattaccgaaaaattaatggtgaatcggggaatatgcaaaatagattgcaaatgtat
ggaaaaaagaagtgtcctatttgtaataagcgaacattgcaacaaacaattggtggtcga
acgtccacttattgtggaacatgtcagaggtaa
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