Psychrobacter sp. PAMC27889: E5677_00730
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Entry
E5677_00730 CDS
T06076
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
psyp
Psychrobacter sp. PAMC27889
Brite
KEGG Orthology (KO) [BR:
psyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psyp03021
]
E5677_00730 (rapA)
Transcription machinery [BR:
psyp03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
E5677_00730 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
Tudor_RapA
ResIII
DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QCB31980
LinkDB
All DBs
Position
162785..165667
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AA seq
960 aa
AA seq
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MSIASLHSTEFAVGQRYLSDTESELGLGVVIDVDDRCVHILFPQSEETRVYAKNSAPLSR
VVFKIGDSIYDQDGKCYTVNAVDEVMGVLKYGVDEHERGIMETRLAANITLAKPLERLLA
GRIERGDWYELRQDILRMQSALAGHPLKGLMGARVDIIEHQLYIAHEVGKRIAPRVLLAD
EVGLGKTIEAGLIIHQQLLTGKAERVLILVPDSLQYQWMIELRRRFNLNFALFDLVRTAA
IKEHDPEQNVFATEQCIIAGMDLLLDHPDLYDQAMEAGFDLLVVDEAHHLHWDEAQGGND
KYDLIADFAEETPGVMLLTATPEQLGAQSHFARLRLLDPDRFDDLDEFIDGQEAFAETAA
VASVLIEDKPVSEGQIAALSSLLDINIDELAAINDDEKLRTYALNELLDRHGTGRILFRN
TRESVKGFYGRSSQPYPLPLPEAWKDSYQTNGKLREQLWGEENQPDGGWLEDDPRVPWLI
DILKGDLKHNKVLLIARSGATVESLEAVLRLHAGIKTAIFTEQMTLLERDQAAAFFADSE
GAQILLCSEIGSEGRNFQFASQLILWDLPANPDTLEQRIGRLDRIGQTQQIMLHVPYVQG
TAQERLYQWYNDALNMFNQISPTAQSVQEQYIQELKPMLEGADTDDNRTTLQNVIAEALQ
TRLGLEAQLQAGRDRLLEYNSCRPRVAGRIADAMRDFDSHNLLPQFIERFFASANIDHNI
QRDGSWVIAPIDSTEISDYIDGLPLGDEDGMTLTFEREQALQREDIDFITHEHPLMRAIY
ELASTSTFGNTTVAMLKSAAVPQGMVLLEVNFRVEAIAPKVLNLPATLTTQNIRVFISEQ
GSDLSARISADMIMPHIERLDKNRARQVIKVRGDVIEQRYYEAEDIAREQLTEIGAQASA
RFSQQWSREIKRLKHLQTINPNVRPEEIERLEQLKAQGEQALGNLSLVPDSIRVLVAVKP
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atttctattgcttcattgcacagcaccgaattcgccgttggtcaacgttatttatctgat
acggagtccgagctgggcttgggtgtggtcatcgatgtagacgaccgatgtgtccatatt
ctattccctcaaagtgaagagacacgcgtctatgccaaaaactctgcgcctttatcacgc
gtggtgttcaaaattggtgacagcatttatgaccaagacggcaaatgctatacagtcaat
gcggttgacgaagtcatgggcgtactcaagtacggtgtcgatgagcacgaaagaggcatt
atggagacccgtcttgcggccaatattacgctagcaaagccgcttgaacgtctgctcgct
ggtcgtattgagcgcggtgattggtacgagctgcgtcaagatatcttgcgtatgcagtcg
gcgcttgccggtcacccactcaaaggcttgatgggcgcacgtgtcgatattatcgaacat
cagctctatatcgcgcatgaagtgggcaaacgtatcgcgccacgtgtattgctagccgat
gaagttggccttggtaaaaccattgaagcgggtttgattattcatcagcagctactgaca
ggcaaggctgagcgtgtacttatccttgtaccagacagtttgcaatatcagtggatgatt
gagctgcgtcgccgttttaatctgaactttgcgttgtttgatttggtgcgtactgctgcg
atcaaagagcacgatcctgagcaaaacgtctttgccactgagcagtgtatcatcgctggt
atggatctgctgcttgaccatcctgatttgtatgaccaagcgatggaggctgggtttgac
ctgttggtcgtcgatgaggcgcatcacttgcattgggatgaagcgcaaggcggcaacgac
aaatacgatttgattgcagactttgcagaagagacgccaggcgtcatgctattgaccgcg
acccctgagcagcttggcgcgcaaagtcactttgcccgtttgcgcctattagatcctgat
cgttttgatgatttagatgagttcatcgatggtcaagaagcatttgctgaaacagcggca
gttgctagcgtgttgatagaagacaagccagtaagtgagggtcaaattgccgcgttgagt
agtttgttagacatcaatattgacgagcttgcagcaatcaacgacgatgaaaaattgcga
acctatgcgcttaacgagttactcgatcgtcatggtacgggccgtatcttgttccgcaat
acacgtgagagtgtaaaaggcttttatggtcgtagcagtcagccatacccactgccatta
cctgaggcttggaaagacagttatcaaactaatggcaaattgcgtgagcagctatggggc
gaagaaaaccagccggatggtggctggttagaggacgacccacgtgtgccttggttaatt
gacatcttaaaaggcgatctcaaacacaataaagtgttactgattgcgcgtagtggcgcg
acagttgagagtttagaggcagtattgcgcttacatgcaggtattaagacggctatcttt
actgagcaaatgactctgcttgagcgtgaccaagcggcggcattttttgccgatagcgaa
ggcgcacagatactattatgttcagagattggttcagaaggccgtaacttccagtttgcc
agtcaattaatactatgggatttgcctgccaatccggataccttagagcagcgcattgga
cgtctagaccgtattgggcaaacacagcaaatcatgctgcatgtcccatacgtacaaggc
acggcgcaagagcgtctgtaccaatggtataacgatgcgctcaacatgtttaatcagatt
tcaccaaccgctcaaagcgtgcaagagcaatatattcaagagctaaaaccaatgcttgag
ggtgcggataccgatgacaatcgcaccaccttacaaaatgtgattgcagaggcactacag
acacgtttggggctagaagctcagctacaagccggccgtgatcgtctgcttgagtacaat
tcgtgccgtccgcgcgttgcagggcgtatcgctgatgccatgcgtgattttgatagtcac
aatttattgccgcaatttatcgagcgcttctttgcctcagccaatatcgatcacaatatt
caacgtgatggctcatgggtcattgccccgattgatagcactgagatcagtgattatatc
gatggcttgccactcggtgatgaagacggcatgacgctgacctttgagcgtgagcaagcg
ttacagcgcgaagatattgacttcatcacgcatgagcatccattgatgcgtgccatctat
gagctggcgagcaccagcacctttggtaataccacggttgccatgctaaaaagtgctgca
gtaccacaaggcatggtattgcttgaagtgaattttcgtgtggaagcgattgcgccaaaa
gtcctgaatctgccagcgacattgaccacacagaacattcgcgtctttatcagtgagcag
ggcagcgatttgtcagcccgtatcagcgccgacatgattatgccgcatattgagcgtttg
gataaaaatcgtgcgcgccaagtgattaaagtgcgcggggatgtgattgagcagcgttat
tatgaagccgaagacattgctcgtgagcaactaacagagattggtgcgcaggcaagcgcg
cgctttagccagcaatggtcacgtgaaatcaaacgcctcaagcatctgcaaaccatcaat
cctaacgtacgccctgaagagattgagcgtctagagcaactaaaagcgcaaggagagcaa
gcgctcggtaatttatccttagtgccagattctattcgtgtattggtcgccgtaaaacct
taa
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