Psychrobacter sp. PAMC27889: E5677_04605
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Entry
E5677_04605 CDS
T06076
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
psyp
Psychrobacter sp. PAMC27889
Brite
KEGG Orthology (KO) [BR:
psyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psyp03016
]
E5677_04605
Enzymes [BR:
psyp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
E5677_04605
Transfer RNA biogenesis [BR:
psyp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
E5677_04605
Prokaryotic type
tRNA splicing ligases
E5677_04605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QCB30337
LinkDB
All DBs
Position
complement(1073175..1074407)
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AA seq
410 aa
AA seq
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MQPINHNVIQDGGTPIRLWTKGVPVDPKAHDQLIKASQMPFVYKWLAVMPDVHVGIGATI
GTVLPTKEAIIPAAVGVDIGCGMMAVQTTLTADDLPDNLRGLRTELEKAIPHGRSKTRGR
GSRRDVGAWTNPDNSVKDSWGTLVDDFNYLTQKHPKLKNTNNLTHLGTLGTGNHFVEVCL
DETNQVWIMLHSGSRGVGNAIGRYFIELAREDMRKWFINLPDKDLAYFAEGTEHFDDYWF
AVGWAQRFAFKNREIMMEKAIKALRQIVTKPFDAAVKAVNCHHNYVDKEEHYGEEIFITR
KGAVRARVGEYGIIPGSMGAKSFIVRGKGNEESFCSCSHGAGRVMSRTQAKQEFTVADQI
AQTEGVECRKDSDVIDEIPAAYKNIDDVMNAQSDLVEVVHTLRQVVCVKG
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgcaaccaataaatcataatgttattcaggacggtggaacgccaatcagactttggaca
aagggcgttcctgtcgatccaaaagcacatgaccagcttatcaaagcatcacaaatgccg
tttgtctataagtggctcgcggtgatgcctgacgtgcatgtcgggattggcgcaactatc
ggtacggtattgccaaccaaagaagcgattatccctgcggctgtcggtgtcgatattggc
tgcggtatgatggcagtacaaacgacgctgaccgctgatgacttgcctgataatttgcgc
ggtctgcgcactgagcttgaaaaagccattccacacggccgtagcaaaactcgtggacgc
ggttctcgtcgtgatgtcggtgcatggacaaatcctgataatagcgtcaaagatagctgg
ggtacattggtcgatgattttaattatctgacccaaaagcaccctaagcttaaaaacacc
aataacctgactcatttgggaacgctgggtacgggcaaccattttgtagaagtgtgcttg
gatgagaccaatcaggtgtggatcatgctgcattcaggttcgcgcggcgtgggcaatgcc
atcggtcgctactttattgagttggcgcgtgaggacatgcgtaagtggtttatcaacttg
cccgataaggatttggcttatttcgccgaagggactgagcacttcgatgactactggttt
gccgtaggctgggcgcagcgtttcgctttcaaaaaccgtgaaatcatgatggaaaaagca
atcaaagctttgcgtcaaattgtgacgaaaccgtttgatgcggcagttaaagcggtgaac
tgtcatcataattacgtcgataaggaagagcactacggtgaggaaatatttattactcgt
aaaggcgcggtacgtgctcgcgttggtgaatacggtatcatcccaggatcaatgggcgca
aaatcctttatcgtgcgcggtaaaggcaacgaagaatccttttgctcttgctctcatggt
gcaggtcgcgtgatgtcacgtactcaggcaaaacaggaatttacggtagccgatcaaatc
gcgcaaaccgaaggtgtggaatgccgtaaagatagcgatgtgattgatgagattccagcg
gcttataagaatattgatgatgtgatgaacgcgcagagtgacttggtggaagtggtacat
accttgcggcaggtggtttgtgttaagggttga
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