Psychrobacter sp. PAMC27889: E5677_04820
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Entry
E5677_04820 CDS
T06076
Symbol
dnaQ
Name
(GenBank) DNA polymerase III subunit epsilon
KO
K14159
ribonuclease HI / DNA polymerase III subunit epsilon [EC:
3.1.26.4
2.7.7.7
]
Organism
psyp
Psychrobacter sp. PAMC27889
Pathway
psyp03030
DNA replication
psyp03430
Mismatch repair
psyp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psyp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E5677_04820 (dnaQ)
03430 Mismatch repair
E5677_04820 (dnaQ)
03440 Homologous recombination
E5677_04820 (dnaQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psyp03032
]
E5677_04820 (dnaQ)
03400 DNA repair and recombination proteins [BR:
psyp03400
]
E5677_04820 (dnaQ)
Enzymes [BR:
psyp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
E5677_04820 (dnaQ)
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.4 ribonuclease H
E5677_04820 (dnaQ)
DNA replication proteins [BR:
psyp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
E5677_04820 (dnaQ)
RNase H
E5677_04820 (dnaQ)
DNA repair and recombination proteins [BR:
psyp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
E5677_04820 (dnaQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_H
RNase_T
RNase_H_2
Rv2179c-like
DUF1451
Motif
Other DBs
NCBI-ProteinID:
QCB30375
LinkDB
All DBs
Position
complement(1126932..1128575)
Genome browser
AA seq
547 aa
AA seq
DB search
MSDNRNIPSLNTNSTMNPLAAKANTTVAYTDGACKGNPGAGGWGAHLIFSDGSTQDLYGG
DKETTNNRMELMGAIQALMHSPLEQKLEIWTDSSYVQKGITEWIEGWKKRGWKTAGKKPV
ANQDLWQQLDALTQKRDVDWHWVKGHAGHTGNEKADELANLGVTSSSDHSSALHTQNLSK
KKVSIMTDDASAASGHDWLSFDPLGLDMEENELDEELDNEPLESHNNDNNMMAKDAIIDT
NRYEAHAHTPPHATKPMSTIDMPEAHVPMNVPTSVPMTDTMNEGKLSEVADDGVKFDGDT
SRANPHFKPLLPEPKHRHESDRQLIMDTETTGLDALKGDRVIEVGIVEMVGRKFTGEKLH
VYINPQRGMDEEVIRIHGISEAFLADKPTFDQVAKSLYDFMDGAEIIAHNASFDMNFLNM
EFAKVGLNDFAERVRVTDSLAMAKQQYPGQKNTLDALVRRLDVGKQDRTFHGALLDSEIL
AEVYLAMTGGQVTLAIEEDAQTEGGQTAHANFSDLAALLLASSTDEDANQQWYTSLSEDY
PELKAHM
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacaatcgcaacataccctcattgaacacaaatagcacgatgaatccattggcc
gccaaagcgaataccactgtggcttatacggatggtgcctgtaagggcaatcctggtgct
ggtggctggggcgcgcaccttatattcagcgatggtagcacgcaagatttatatggcggt
gataaagagacgaccaataaccgtatggagttgatgggtgccatacaagcactgatgcac
agtcctcttgagcaaaaacttgagatttggaccgactcaagttatgtccaaaaagggatt
acagaatggatcgagggctggaaaaaaagaggctggaaaacagcgggcaaaaaacctgtg
gccaaccaagatctttggcaacaattggatgcgttgacccaaaaacgtgatgttgattgg
cattgggtaaaaggtcatgctggacataccggcaacgaaaaagcagacgaattggcaaac
ctaggcgtcacctccagtagcgatcattcatcagccctgcacacacagaatttatctaaa
aaaaaagtgtccataatgactgacgatgcatcagcggcttctggtcatgactggttaagt
tttgaccctctaggtctggatatggaagagaacgaacttgatgaagagcttgataatgag
ccactagaaagtcataacaatgacaataatatgatggctaaagacgctataatagacaca
aatcgctatgaagcacacgctcatacaccgcctcatgcgaccaaaccaatgagtaccata
gatatgccagaagcccatgtaccaatgaatgtaccaacatctgtcccaatgaccgataca
atgaatgaaggcaaactgtcagaggtagcggatgatggtgtcaaattcgatggtgatacc
agtcgtgccaatccgcactttaagccgctgctacctgaaccaaaacatcgtcatgaatct
gaccgtcaactgattatggataccgagaccacaggacttgatgcgctaaaaggcgatcgt
gtcatcgaagttggtatcgtcgagatggttgggcgtaaattcactggcgaaaaactgcat
gtctatattaacccacagcgcggtatggatgaggaagtcattcgcattcatggtatctct
gaggcatttttagcggataagccaaccttcgatcaagtggcaaaatcgctatatgacttt
atggatggggcagaaatcatcgcccataacgcctcgtttgatatgaacttcttaaacatg
gagtttgctaaagttggtctcaatgactttgccgagcgggtacgagtgactgactctttg
gccatggcaaaacagcagtatccggggcaaaaaaacaccctagatgccttagtaagacgt
ttagatgtgggtaagcaagatcgtactttccatggtgctttacttgactcagagattttg
gctgaagtatatttagcgatgacaggtgggcaggtcacgcttgccattgaggaagatgca
caaactgagggcggacaaactgcccatgcaaattttagcgatctagccgctttattgctg
gcgtcaagcacagacgaagacgcaaaccaacagtggtacacctcgctttcagaggactac
cctgagctcaaagcccatatgtag
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