Psychrobacter sp. PAMC27889: E5677_05970
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Entry
E5677_05970 CDS
T06076
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
psyp
Psychrobacter sp. PAMC27889
Pathway
psyp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psyp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E5677_05970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psyp03019
]
E5677_05970
Enzymes [BR:
psyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E5677_05970
Messenger RNA biogenesis [BR:
psyp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E5677_05970
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QCB30580
LinkDB
All DBs
Position
1413442..1414596
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AA seq
384 aa
AA seq
DB search
MSNFTTFTDLPLSAATLRAINDLGFTALTPIQAKILPHTLANQDAIGQAQTGTGKTATFL
LTIMEALLKRPFGSDEERYLGEPRAVVMAPTRELAQQIFEDCLALTKYTSLHSVCIMGGT
NYENQQHELDRQYVDILVATPGRLIDLANKGMVFLDRVEVLVLDEADRMLDMGFIPDIKR
LVGRMPANTDRQSLLFSATFNQDVMNLAYRWLHEPQFVEIEPEHKTSELVDQHFYLLTED
QKLTALQRIINDATVEKVIIFANRKDQVKRLYHKLRQAHKIVMLSGDVIQQKREKYLQRF
KDGHASVLVATDVAGRGIHVDDISHVINYTLPDQPDDYVHRIGRTGRAGQKGISISFVSE
DDAFNIPALEDHLETKFALEQWQE
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaattttacgacctttactgacttgccactgtcagctgcaacgttacgtgccatc
aatgacttggggtttacggcattgacccctattcaggcaaaaatactgcctcatactttg
gcaaaccaagatgctattgggcaggcacagacgggtactggtaagacggcaacgttttta
ttgactattatggaagcactacttaagcgtccttttggtagcgatgaagaacgctactta
ggagagccacgtgccgtggtcatggcacccactcgtgaacttgctcagcaaatatttgaa
gattgtcttgccttgactaagtacacatcacttcatagtgtgtgcatcatgggtggaacc
aattatgaaaatcagcagcatgagcttgatcgtcaatatgttgatattctagtagcaacg
cctggccgtctcattgatcttgccaataaaggcatggtttttttagatcgtgtggaagtg
ctggtattagatgaagctgatcgcatgctcgacatgggatttatcccagatatcaaacgc
ctagtaggccgaatgccagctaatacggatcgtcaaagtttattattttcggcgactttc
aaccaagacgtgatgaatttagcttaccgctggttacatgaaccccagtttgttgagatt
gaacctgagcacaaaaccagtgagttggtcgatcagcatttttacttattaacggaagat
caaaagctaacagcgttgcagcgcattattaatgatgctacggtagaaaaagtgattatc
tttgccaatcgcaaagatcaagtcaaacgtctttatcataagctgcgccaagcccataaa
attgtcatgttatcgggtgacgtcattcaacaaaaacgtgaaaaatatctacagcgtttt
aaagatggtcatgcctcagttttagtggcgacggacgtagcaggtcgcggtattcatgtc
gatgatatcagtcatgtgatcaattatactttgcctgaccaaccagacgattatgtgcat
cgcattggacgtactggtcgcgctggacaaaaaggcattagtatcagctttgtgagtgaa
gatgatgcttttaatataccagcgttagaagatcacttagagactaagtttgcgcttgag
cagtggcaagagtaa
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