Psychrobacter sp. PAMC27889: E5677_06845
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Entry
E5677_06845 CDS
T06076
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
psyp
Psychrobacter sp. PAMC27889
Pathway
psyp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psyp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
E5677_06845 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psyp03400
]
E5677_06845 (recD)
Enzymes [BR:
psyp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
E5677_06845 (recD)
DNA repair and recombination proteins [BR:
psyp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
E5677_06845 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
SH3_13
Viral_helicase1
AAA_11
AAA_22
Helicase_RecD
SLFN-g3_helicase
Herpes_Helicase
UvrD-helicase
PhoH
nSTAND3
UvrD_C
NPHP3_N
AAA_16
DEAD
ResIII
DO-GTPase1
AAA_28
Motif
Other DBs
NCBI-ProteinID:
QCB30734
LinkDB
All DBs
Position
complement(1636901..1639087)
Genome browser
AA seq
728 aa
AA seq
DB search
MSNNNNKSKAAIGVKESWASNLSDYILLRRQQTHLAYSATDSKANTDSNQFDKTEDSMLF
TAFFVMLATHLEEGHTVLTIEEAEDEVPLQGQINHEFVALYGWQKALLAMLATPIFALID
TQISTQMEEDSTAEISLFTLLDTLFTKESQLWVQLALSNPEKEMLNKRFTTIASLYRLLK
NTDLDFFMELVTQHTLFADVGADITKQNSLSNNKPIIYKKIEHEKTSAVSITFWLHRSWQ
AEFNLAKHISTILEQPITPLALSIPKNLNEQQTKAINVANNNAFSIITGGPGTGKTYTVA
QLVIALQQATESRDEQQESIRFSTDSASLALAAPTGKAAQRMQESLQAALDTSEVKMQLQ
EAKTIHRLLGIGRTGRPRYDASNPLGEDIIIVDEASMLGVELANYLVSAVKPGARLILLG
DANQLAAVDAGAVLADLCHIPILQSIHAELLESRRFSAESGIGKLANQINQTEVDTQKIW
QLLKQDDALSFQYVNTLQIDESNDNKIKNSLSRNKNISRMTENYHPYIAKIKGLLENPMK
KSMPESVNATVTALIEVFNQFRILSAGHNGEWGDHYINNYLTQWHLAELKLPLGQNTWFH
GRPVMVLQNNYELGLFNGDIGFCLQTGDERSRLEVFFENKAQGIAVNLLNEEVIATAYAM
TIHKSQGSEFDHVAITFDNSHARLLSKELIYTAVTRAKKQVTIYSTKYAFEKAVQTPTER
HTGLGLQF
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgagtaataataacaataaaagtaaggcagcgattggggtaaaagaaagctgggccagt
aacctcagtgactacattctattacgccgtcagcaaacgcatttagcgtatagtgcaaca
gattcaaaagcaaatactgatagcaatcaattcgataaaacagaagacagtatgctattc
actgctttttttgtgatgttagcgacccatttagaagaggggcacacagtactaactatt
gaggaagctgaggatgaagtaccgttgcaaggccagatcaatcacgaattcgttgcgcta
tatgggtggcaaaaagcgttgttagcaatgctcgcaacgccaatcttcgctctgatagac
acccaaatcagtacacaaatggaagaggattcgacagctgaaatatcactatttaccttg
ctagatactttatttaccaaggaaagtcagctttgggtgcagcttgccctaagtaatcct
gaaaaagagatgctgaacaagcgctttactacgattgccagcttatatcgactactaaaa
aatacagatttagattttttcatggaattggtcactcagcatactttattcgcagacgtg
ggcgctgacatcacaaaacaaaatagcctaagcaacaacaaacccattatttataaaaaa
attgagcatgaaaaaacatcagcagtatccatcactttttggctgcatcgctcttggcaa
gcggagttcaacttagcaaaacacatcagtactattttagaacaacccataacacctcta
gcgttatccatacccaaaaacctgaacgagcaacaaacaaaagccatcaatgtggccaac
aacaatgcgtttagtatcatcactgggggtccaggcacaggcaaaacctatacggtcgcc
cagctcgttattgcgttacaacaggccacagagagtagggatgagcagcaagagagcatt
agattcagtacagatagtgcaagcctagcgctcgcagcaccgactggtaaagcagcacag
cgaatgcaagagtctttgcaagcggctctagatacatcagaagtgaaaatgcaattacaa
gaagccaaaaccatccatcgtttgctaggcatcggtagaacgggtagaccgcgttatgat
gccagtaatcctttgggtgaggacatcattattgttgatgaagcctcaatgctgggtgtt
gaattggccaattatcttgtcagcgccgtaaagccgggtgcaaggctgatactgttagga
gatgccaaccagctagcagcggtagatgcaggagcagtactggctgatttgtgtcatatt
ccgatattacaatccattcatgctgagctactcgaaagccgccgttttagcgcagaatca
ggtattggtaaacttgcaaatcaaatcaatcaaacagaagtagacactcaaaaaatttgg
cagttattaaaacaagacgacgcattgagcttccaatacgtaaacaccctgcaaatagat
gagagtaatgataataagataaaaaatagcctaagtagaaataaaaatatttcaagaatg
acagaaaattaccatccctatatagccaaaattaaaggtctactagaaaatccaatgaaa
aaatccatgccagaatcggtaaatgcgacagttacagcgctgatagaggtgtttaatcaa
tttagaattttaagcgcgggtcataatggtgaatggggtgatcactatatcaataattac
ctcacacaatggcatcttgctgaactcaaactaccactaggtcagaatacatggttccat
ggtcgccctgttatggttttacaaaataactatgagttaggattgtttaatggcgatatt
ggtttttgtttgcagacaggagatgagagaagtcgattagaagtgttttttgagaataaa
gcacaaggtatcgctgttaatctactgaatgaagaagtgattgcgaccgcatatgcgatg
accattcataagtcacagggatctgagtttgatcatgttgctattacttttgacaatagt
catgccagactgctcagcaaagagcttatttatacagcggtgacacgggctaaaaaacaa
gtgaccatctatagtacaaaatatgcgtttgaaaaagcagttcaaaccccaactgagcgt
catactggtttaggactacaattttag
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