Psychrobacter sp. PAMC27889: E5677_09130
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Entry
E5677_09130 CDS
T06076
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psyp
Psychrobacter sp. PAMC27889
Pathway
psyp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psyp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E5677_09130 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psyp03400
]
E5677_09130 (mfd)
Enzymes [BR:
psyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E5677_09130 (mfd)
DNA repair and recombination proteins [BR:
psyp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
E5677_09130 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
SNF2-rel_dom
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
CbiX
Motif
Other DBs
NCBI-ProteinID:
QCB31143
LinkDB
All DBs
Position
complement(2215521..2219225)
Genome browser
AA seq
1234 aa
AA seq
DB search
MPITALTDAFDPINQQLFPIQNTERRWLAPVHGAVSSLWLASLVQAPIWEVADRLKIVVT
RDQNQLNQIETELAFCGVDAYVFPDWETLTYDELSPHQDIVSERINLLTDMPTSGVLLIS
AQALMHRVAPPSWLIGQHFDLSVGDRFDINTQRELLAKAGYRAVENVFEPGEFAVRGSII
DIFAMGQPFPLRLDLFDDEIETIRFFNPQTQRTLTTEDLNAMMTGNDSSMAKESLSLLHK
LPDISKPIKQFQILPAKEFPLDEGRETFRTNFAAMFPNTSSRKFELHKDVMAGIASSGLE
YYQPLFFDTKDWEAESSLFAYLPSDALFITDELIHEKQADYWSQIQRRYEERRHDIDKPI
VAPELLYLLSNTFNEHLNHYPRVILSARDELITMNDGDVIDKENGSLASTASTQKQGLVT
LSAQKPPQLAVNHQKAEPLSELLDFLSIQAQTSTPVLVVAETAGRREILIELFKGKVNVK
AYDSFEAFLAADKTKRVADNNLPQVGLTVAPIERGVYVPERLVLISETQLFGRQVLQTRR
HRQSGVSEEFLVKSVTEITEGSPVVHIEHGIGRYNGLITLDVGDGEQEFIHLKYADDASI
YVPVANLQMINRYSGGDPALAPLHKIGSGKWDKAKQKALEQIHDVAAELLNMQARREAKV
GIHFKIDSSQYELFASQFAFEETPDQANAIHAVMEDMRQNQPMDRLICGDVGFGKTEVAM
RAAFIAVSAGYQVAVLVPTTLLAGQHEDNFRDRFADWPVRIETLSRFGGKKHQDTVLADL
AAGKVDIVIGTHKLLQPDVKFSNLGLMIVDEEHRFGVRHKERIKAIQTDVDSMSMTATPI
PRTLNMALSGMRDMSIIATPPARRLAIKTFVMQKTEALLKEAILRELLRGGQVYLLHNDV
ASIERMAETIRELVPEARVGVAHGQMQERQLEQVMQQFYHKKFNVLICSTIIETGIDVPN
ANTIIIERADKFGLAQLHQLRGRVGRSHHQAYCYLLVPSIKGLKGDAKRRLHAIEHANTL
GAGFMLASEDLEIRGAGEILGKQQSGNMQAIGFSLYMDMLERATKAIKAGKEPDLSTPLS
LTSEINLHSSALIPEEYLHDVHQRLLFYKRISNADDKEALTDIRTEMIDRFGTLPDQTKQ
LFAVHGLRLQAEPLKINKIDANSNSMTLEFAPDTPVEALAIIKLIQTDGQRYRMNGASGI
RYQDADKLATPQQRVTVIQDLLRYFSEHMVDESS
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atgcctatcactgctttgactgacgcatttgaccctattaatcagcagctttttcctatc
caaaataccgagcgacgttggcttgcgcctgtgcatggtgctgtcagtagtttgtggctg
gcaagtttggtacaagcgccaatatgggaggttgctgaccgtctcaagatcgtggtgaca
cgtgatcaaaaccagctcaatcagatagagacagaattggcattttgtggagtcgatgcc
tatgtgtttcctgattgggaaacgctgacgtacgatgagctatcaccgcatcaagacatc
gtcagtgagcgtattaatctgctgacagatatgccaacctcaggagtgctcttaatatct
gcacaggcattgatgcaccgtgtggcaccgccaagctggttgattggtcagcactttgat
ttgagcgttggtgatcggtttgatatcaatacgcagcgtgagttgctggcaaaagcaggt
tatcgagcggttgaaaatgttttcgagccaggcgaatttgctgtgcgtggtagtatcatt
gatatctttgcgatgggccagccatttccgctgcgtcttgatttatttgatgacgagatt
gagacgattcgattcttcaatcctcaaacccagcgtacgttgaccactgaagatctcaat
gccatgatgacgggcaatgacagcagtatggccaaagaatcactgtctctattgcataaa
ttacctgatatttcaaaacctatcaaacaatttcaaatcctaccagcaaaagagtttcca
ctcgatgaagggcgcgaaactttccgtacaaattttgccgcgatgtttccgaacactagt
agccgtaaatttgagctacataaagatgtgatggcaggtattgccagtagcggtcttgag
tattatcagcctttattttttgatacaaaagactgggaggcagagagtagtttgtttgcc
tatttgccaagtgacgcactgtttattactgatgaattgattcatgaaaaacaggcagat
tactggtcacaaatccagcgccgctatgaagagcgccgccacgatattgacaagcccatt
gtcgcccctgagttgttatatctattatcaaatacctttaatgagcatctgaatcattat
ccccgtgtgatattgagcgcgcgtgatgagttgattaccatgaatgatggtgacgttata
gacaaagagaatggatcattagcgtctacggcctctactcaaaaacaagggctagtcacg
ctaagcgctcagaagccaccacaactggcagtaaatcatcaaaaagctgaacctttaagc
gaattattagactttttgagtatacaggcgcaaacctcgacacccgtcttggtggttgct
gaaaccgcaggacgtcgtgagattctgattgagctattcaagggtaaagtcaatgttaag
gcgtatgacagctttgaagcgtttttagcggcggataaaacaaagagagtcgctgataat
aacttaccacaagtcggcttgacagttgcacccattgagcgcggcgtttatgtgcctgag
cgtttggtactgattagtgagacacaattatttggtcggcaggtgctgcaaacacgtcgt
catcgtcaaagcggtgtatcagaagaatttttggtaaagagcgttacggaaataacggaa
ggcagcccagttgtccacatcgagcatgggattggtcgttataatggtctgattactttg
gacgttggtgacggtgagcaagaatttattcatttaaagtatgccgatgacgccagtatt
tatgtcccagtcgctaatctacaaatgattaatcgctatagtggtggagatccggcgtta
gctccgttgcacaaaattggtagcggtaaatgggataaagcaaaacaaaaagcgctagaa
caaattcatgacgtggccgctgagctcttaaatatgcaagcgcggcgcgaagccaaagtc
ggtattcattttaaaatagacagctcacaatatgagctctttgctagccagtttgctttt
gaagaaacgcctgaccaagcgaatgccattcatgccgtgatggaagatatgagacaaaat
cagccaatggatcgtctcatttgtggagatgtgggttttggtaaaactgaggttgccatg
cgtgccgcttttattgcggttagtgcaggctaccaagttgccgttttggttccaaccacg
ctgctggcaggtcagcatgaagacaacttccgcgatcgttttgctgattggccagtacga
attgaaacgttatctcgctttggtggtaaaaaacatcaagataccgtattggctgattta
gcggctggtaaagtcgatatcgtcattggtactcataaactgctacaaccggatgtgaag
ttttccaatctgggcctcatgattgtcgatgaagagcatcgttttggtgtgcgtcacaag
gagcgtatcaaggctattcaaacagacgttgatagtatgtcaatgactgctacgcctatt
cctagaacgcttaacatggcactgtcaggtatgcgagatatgtcaatcatcgccaccccg
ccagcacgtcgtctggcgattaaaacttttgtgatgcaaaagacagaagcattgctaaaa
gaagcaatcttgcgtgagcttttgcgcggtggacaggtatatttacttcacaatgacgtt
gccagtatcgagcgtatggcggagactattcgtgagcttgttcctgaagctcgcgtgggt
gtcgctcatggtcaaatgcaagaacgtcaacttgaacaagtgatgcagcagttttatcat
aaaaagtttaacgtattgatctgttcgaccattatcgaaacgggtattgatgtccccaac
gccaataccattatcattgagcgtgctgataagtttggtcttgcgcagctacatcaatta
cgtggtcgcgtaggtcgtagccatcatcaagcctattgttatttactggtaccctctatc
aaaggacttaaaggtgatgctaagcgtcgtctgcatgcgattgaacatgccaatacctta
ggcgcaggctttatgctggcaagtgaggatttggaaattcgcggtgctggcgagatatta
ggaaaacagcaaagtggtaatatgcaggcgattggttttagcttgtatatggatatgctg
gaacgtgccaccaaagccattaaagcaggtaaagagcctgatttgagtacaccattgtcg
ctgaccagtgagattaatttgcatagctctgctttgataccagaagagtatttgcatgat
gtgcatcagcgtttgctattttataagcgcattagcaatgccgatgataaagaagcgctc
acagacatccgtaccgaaatgattgaccgttttggtacattgccggatcagactaagcaa
ctttttgcggttcatggattgcgcttacaagcagaaccgctcaagattaataaaattgat
gccaatagcaatagtatgacgcttgagtttgccccagataccccagtcgaagcattggca
attatcaaactgattcaaaccgatgggcagcgatatcgaatgaatggtgcctctggtatt
cgttatcaggatgctgataaattggcaacgccgcaacagcgagttactgtcatccaagac
ttgcttcgctactttagtgaacatatggttgatgagtccagctag
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