Psychrobacter sp. PAMC27889: E5677_11255
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Entry
E5677_11255 CDS
T06076
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
psyp
Psychrobacter sp. PAMC27889
Brite
KEGG Orthology (KO) [BR:
psyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psyp03009
]
E5677_11255 (rlmD)
Enzymes [BR:
psyp01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
E5677_11255 (rlmD)
Ribosome biogenesis [BR:
psyp03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
E5677_11255 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
PCMT
Methyltransf_25
Methyltr_RsmB-F
Ubie_methyltran
MTS
TRM5-TYW2_MTfase
TRAM
Cons_hypoth95
Methyltransf_11
GCD14
Methyltransf_23
Methyltrans_SAM
FtsJ
Motif
Other DBs
NCBI-ProteinID:
QCB31522
LinkDB
All DBs
Position
2713220..2714761
Genome browser
AA seq
513 aa
AA seq
DB search
MQPTDSKTPTALDATQKASDTQNIAIPPNKKKSKPSSKTRRRLKEAEPLPFTIDGLSHDG
RGVAVYGNGFGVADGHAEEKHGKKIFVSFALPGESAVVKLTNVRNSFEEGDAISITANPN
PERAVPPCPHFGVCGGCNLQHWAPEGQINFKQSVLAEMLMHQANAAPDHWLEPVVGDRLG
YRTKARLGVRYVVKKETALVGFRERSSNFLAELNECHILDPRIGFEIENLKTLIGTLESR
DKIAQLELAMGEQIPELPDGNQSVALIVRNLEPLSDADIDKLKAFFAARNWQLYLQSKGV
DSIERIALTDADDMSQQFGRLYYQLPEYDLTFEFIPTDFTQVNLSVNRQMTKLACDLLDL
KAGERVLDLFSGLGNFSLPLARLVGETGSVVGVEGSEAMTLRAADNARRNGINNTEFYSQ
DLTQDCTDKPWANQGFDALLIDPPRSGAWEIMQYLPKFNAERIVYVSCNPATLARDTKAL
LEQGYRLTHAGVMDMFCHTGHVESIARFEKIAI
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgcaacccaccgattcaaaaacaccgacagcgcttgatgcgacgcaaaaagccagtgac
actcaaaatattgcaattccccctaataagaaaaaatccaagccttcctcaaagacacgt
cgtcgtctaaaagaagcagagccattgcctttcactattgatggcttatcgcacgatggt
cgcggtgttgccgtatatggtaatgggtttggcgtcgcggatggtcatgctgaagaaaaa
catggtaaaaaaatctttgtgagttttgcattgccaggcgaaagtgctgtggtcaaattg
accaatgttcgtaatagttttgaagaaggcgatgccattagcattactgccaacccaaac
cctgagcgtgccgtaccaccctgcccgcacttcggcgtttgcggtggttgtaatttgcag
cactgggcacctgaagggcaaatcaattttaaacaatctgtattggctgaaatgctcatg
catcaagcaaatgcagcgcccgaccattggcttgagccagtcgttggtgaccgcctaggc
tatcgcaccaaagctcgacttggtgttcgctatgttgtcaaaaaagaaacggccttggtc
ggtttccgtgagcgctcaagtaattttttggctgagttaaatgagtgtcatatcttagat
ccgcgtattggttttgagattgagaatctcaaaaccttgattggtacgttagagagccgc
gataagatcgctcagcttgagttggcaatgggtgagcaaatcccagagctaccagatggc
aatcaatctgtcgctcttatcgtccgtaacttagagccattatcagatgctgatatcgat
aagctaaaagcattttttgcagcgcgcaattggcagctgtacctacaatctaaaggcgtt
gatagtattgaacgtattgctttgacagacgctgacgacatgagccagcagtttgggcgc
ttgtattaccagctaccagagtatgatcttacttttgaatttattcctactgacttcacc
caagtgaacttgtctgtcaatcgtcaaatgaccaagcttgcttgtgacttgctggactta
aaagcaggtgaacgcgtcttggatctattcagcggtcttggtaattttagcttaccatta
gcccgacttgttggagaaacagggtcggttgtcggggtggaaggtagtgaggcaatgact
ttacgtgcagcagataatgcacgtcgcaatggcatcaacaatactgaattttatagtcaa
gacttaacgcaagactgcactgataagccatgggccaatcaaggcttcgacgcactatta
attgacccgccacgctctggtgcatgggaaattatgcagtatttgcctaagtttaatgct
gagcggatcgtttatgtttcttgtaatccagcaacgcttgctcgtgacaccaaagcttta
ttagagcaaggatatcgtctgacgcacgcaggcgtgatggatatgttctgccacacaggc
cacgttgaatccattgctcgatttgaaaagatagccatttaa
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