Pseudomonas sp. Y39-6: HXW90_06715
Help
Entry
HXW90_06715 CDS
T11426
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
psyq Pseudomonas sp. Y39-6
Brite
KEGG Orthology (KO) [BR:
psyq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psyq03009
]
HXW90_06715 (rimO)
Enzymes [BR:
psyq01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
HXW90_06715 (rimO)
Ribosome biogenesis [BR:
psyq03009
]
Prokaryotic type
ribosomal protein modification factors
HXW90_06715 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
TRAM
CLP1_P
YajR_YAM
Matrix_Paramyxo_N
DUF730
Motif
Other DBs
NCBI-ProteinID:
QPO23820
LinkDB
All DBs
Position
complement(1500529..1501857)
Genome browser
AA seq
442 aa
AA seq
DB search
MAKANPKVGFVSLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDSAKAE
SLEVIGEAIKENGKVIVTGCMGVEEGNIRNVHPSVLAVTGPQQYEQVVNAVHQVVPPRQD
HNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDEAQRL
VKSGVKELLVISQDTSAYGVDVKYRTGFWNGAPVKTRMTELCEALSSLGVWVRLHYVYPY
PHVDELIPLMAAGKILPYLDIPFQHASPKVLKAMKRPAFEDKTLARIKNWREICPELIIR
STFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANLLDLAVVPDDVKQDRW
ERFMAHQQAISSARLQLRIGKEIEVLIDEVDEQGAVGRCFFDAPEIDGNVFIDDASGLKP
GDKVWCTVTDADEYDLWAEKRD
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atcgcaaaagccaaccccaaggtcggctttgtttccctgggctgcccgaaggctctggtc
gactccgaacgcatcctgacgcaactgcgcatggaaggttatgacgtcgtgtccacttac
caggacgcggacgtggtggtggtcaacacctgcggcttcatcgactcggccaaggcggaa
tccctggaagtgatcggcgaggccatcaaggaaaacggcaaggtcatcgtcaccggctgc
atgggcgtggaagaaggcaatatccgcaacgtacacccgagcgtgctggccgtgaccggt
ccgcagcagtacgagcaggtggtcaacgccgtgcatcaagtggtgccgccgcgccaggac
cacaacccgctgatcgacctggtgccgccgcaaggcatcaagctgaccccgcgccactac
gcgtacctgaagatttccgaaggctgcaaccacagttgcagcttctgcatcatcccgtcg
atgcgcggcaagctggtcagccgcccggtgggcgatgtgctggacgaagcccagcgcctg
gtcaaatctggcgttaaagagctgctggtgatctcccaggacaccagcgcctacggcgtc
gacgtgaaataccgcaccggcttctggaacggtgcgccggtgaaaacccgcatgaccgag
ctgtgcgaagccctcagcagcctgggcgtgtgggtgcgcctgcattacgtgtacccgtac
ccgcacgtggacgagttgatcccgttgatggccgccggcaagatcctgccgtacctggac
atcccgttccagcacgccagcccgaaagtgctcaaggccatgaaacgcccggccttcgaa
gacaagaccctggcgcgcatcaagaactggcgcgagatctgcccggaactgatcatccgt
tcgaccttcatcgtcggcttcccgggcgaaaccgaagaagacttccagtacctgctcgac
tggctgaccgaagcccaactggaccgcgtcggctgcttccagtactcgccggtcgaaggc
gccccggccaacctgctggacctggccgtagtaccggatgacgtcaagcaagaccgttgg
gagcgcttcatggcgcaccagcaggcgatcagctcggcgcgcctgcaactgcgcatcggc
aaggaaatcgaagtgctgatcgacgaagtcgacgagcaaggcgccgtaggccgctgcttc
ttcgacgccccggaaatcgacggtaacgtatttatcgacgatgccagcggtttgaagccg
ggtgacaaggtctggtgcaccgtgaccgatgccgacgaatacgacctgtgggccgaaaag
cgcgactga
DBGET
integrated database retrieval system
