Pseudomonas sp. Y39-6: HXW90_07135
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Entry
HXW90_07135 CDS
T11426
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
psyq Pseudomonas sp. Y39-6
Pathway
psyq03030
DNA replication
psyq03430
Mismatch repair
psyq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psyq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HXW90_07135 (dnaE)
03430 Mismatch repair
HXW90_07135 (dnaE)
03440 Homologous recombination
HXW90_07135 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psyq03032
]
HXW90_07135 (dnaE)
03400 DNA repair and recombination proteins [BR:
psyq03400
]
HXW90_07135 (dnaE)
Enzymes [BR:
psyq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HXW90_07135 (dnaE)
DNA replication proteins [BR:
psyq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HXW90_07135 (dnaE)
DNA repair and recombination proteins [BR:
psyq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HXW90_07135 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
QPO19314
LinkDB
All DBs
Position
1591553..1595074
Genome browser
AA seq
1173 aa
AA seq
DB search
MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAG
IKPICGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGAVIIEREWV
AEASEGVIMLSAAKEGEIGIALLGGNPQEAEVLAREWMAVFPDRFYLEVQRTNRPNDEEH
LHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLK
SAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPEGMTIDEYFRKVSFDGL
EERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGVPV
GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYV
ADKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGDGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVGEAPLDIAFIPLDDKPTYS
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHY
PAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAI
KGVGEGPVEAITEARQNGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFHDEP
KAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYANHRKAKE
LTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGMIIALRVM
KNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLR
IKRVMSMEDARTNLAESLRLKVKTEALKGDQLRWLGDLLKRHRGACPVTMEYTGNDAKAM
LQFGETWRIDPADGLIQALRDQFGRDNVFLQYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgccggcttcattcgttcacctacgcctgcacactgaatactccctggtcgacggcctg
gtacggatcaaaccgctggtcaaaaccctggtgggcatgaacatgcctgccgtcgcggtc
accgatcagaacaacatgtgttccctggtcaagttctacaagaacgccatgggcgccggc
atcaagccgatctgcggcgccgacctgtggctgtcgaacaaagacccggataaccctctg
agccgcatcagcctgttggcgatgaacggcgtcggttatcgcaacctcaccgaactgatt
tcccgtggcttcatcgacggccagcgcaacggcgcggtgatcatcgagcgtgagtgggtg
gccgaggccagcgagggcgtgatcatgctctcggcggccaaagagggcgaaatcgggatc
gcgctgctgggcggcaacccgcaggaagccgaagtgctggcccgcgagtggatggccgtg
ttccctgaccgcttctacctggaagtccagcgcaccaaccgccccaacgatgaagaacat
ctgcacgccgccgtggccctggccgacaagctgggcgcgccgctggtggcgaccaacgat
gtgcgcttcatcaagaaggaagatttcgaagcccacgaaacccgcgtgtgcatcggcgaa
gggcgggccctggatgacccgcgccgctcgaaaaactacagcgaagagcaatacctcaaa
agtgccgaggaaatggccgagctgttcagcgacctgcccgaggccctggaaaactccgtc
gaaatcgccaagcgctgcaatatcgaagtgaagctgggcaagcacttcctgcccaacttc
ccgattcccgaaggcatgaccatcgatgagtatttccgcaaggtatcgttcgatggtctg
gaggaacgcctctcggtcctgctgcccaaggacaccaccgaagattacgaagccaagcgt
caggtttacgtcgaccggctgaatttcgagctggatatcatcatccagatggggttcccc
ggttacttcctgatcgtgatggactttatccagtgggccaagagtaacggcgtgccggtt
ggtcctggccggggctcgggtgccggctcgctggttgcctatgtgcagaagatcaccgac
ctcgacccgctggaatatgacctgctgttcgaacgcttccttaacccggaacgggtctcc
atgcccgacttcgacgtcgacttctgcatggacggtcgcgaccgcgtgatcgaatacgtg
gccgataagtatggccgcaacgccgtgagccagatcatcacgttcggttccatggcggcc
aaggcggtaatccgcgacgtggcccgggtgcagggcaagtcctacggcctggcggatcgc
ctgtcgaagatgatcccgttcgaagtcggcatgaccctggaaaaggcctacgagcaggaa
gaaatcctgcgcgacttcatcaaggtcgacgaagaagccgccgaaatctgggagatggcg
cgcaagctcgaaggcgtggtgcgtaacgtcggtaaacacgccggtggcgtggtgatcgcg
ccgaccaagctcaccgacttttcgccgatctattgcgacgaagaaggcgatggcctggtg
acccagttcgacaaggacgacgtggaggcggccggcctggtgaagttcgacttcctcggc
ctgcggactctgacgatcatcgactgggcgctcaagacgatcaaccgcgaccgtgccaag
gtcggcgaagcaccgctggacatcgcgtttatcccgctggatgacaagccgacctacagc
ctgctgcaaaaagccgaaaccacggcggtgttccagctggaatcccgcggcatgaaagag
ctgatcaaaaagctcaagcccgactgcctggaagacttgatcgcactggtcgccctgttc
cgtccgggcccgctgcaatcgggcatggtggatgacttcatcaaccgtaagcacggtcgc
gccgaactggcctacccgcactcggactaccagtacgaaggcctcaagccggtactggca
ccgacctacggcatcatcctgtaccaggaacaggtgatgcagatcgcccaggtcatggcc
ggttacaccctcggtggtgcggacatgctgcgtcgcgccatgggtaagaaaaagcccgag
gaaatggccaagcagcgcggtggtttcatcgagggttgcgccaccaacaatatcgacgcc
gaccttgccggtaacattttcgacctggtggaaaaattcgccggttatggcttcaacaaa
tcccactccgctgcctacggcctggtgtcgtaccagaccgcctggctgaaggcccactac
ccggcgccgttcatggccgcggtactctcggcggatatgcacaacaccgacaaggtcgtg
accttgatcgaggaagtgcgaaccatgaagctgcgcctcgacgcgccggacgtgaacgcc
tcggagttcaagttcaccgtgaacgacgaaggccgcatcatctatggcttgggggcgatc
aagggggtgggcgagggcccggtggaagcgatcaccgaggcgcgccaaaacggcccgttc
aaggatctgttcgatttctgcgcgcgggtcgacctcaagcgcatcaacaaacgtaccctc
gatggcttgatccgcagcggcgccctcgaccgtctcggcccgtatttccatgatgagccg
aaggcctaccaggcgaatatcgaccgcaatcgcgcggtgctgctgaccgccatggaagaa
gcgatcaaggccgccgaacagaccgcccgcacccacgacagcggtcacgccgacctgttt
ggcgggttgttcgtcgaagaagacgcggatgtctacgccaaccatcgcaaggccaaggag
ctgaccctcaaggaacgcctcaaaggtgagaaagacaccctgggcctgtacctgaccggt
cacccgattgacgaatacgaaggggaaatccgtcgtttcgcccgtcagcgcatcatcgac
ctgaaaccggcgcgcgacacccagaccgtcgccggcatgatcatcgccctgcgggtgatg
aaaaacaaaaagggcgacaagatgggctttatcaccctcgacgaccgctccggccggatc
gaggcgtcgctgtttgccgatgcgttccattcggcgcagtcgctgttgcagaccgacgcc
atggtggtggtggaaggggaggtcagcaacgacgacttctccggcggcctgcgcctgcgg
atcaagcgcgtgatgagcatggaagacgcgcgcaccaacctggccgaaagcctgcgcttg
aaagtcaagaccgaggcgctcaagggcgatcagctgcgctggttgggggacttgctcaaa
cgccaccgtggcgcatgcccggtgaccatggaatacaccggtaacgacgccaaggccatg
ctgcagttcggcgagacctggcgaattgatcccgctgatggcttgattcaagcattgcgt
gaccagttcggtcgtgacaacgtcttcctccaataccgttga
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