Pseudomonas sp. Y39-6: HXW90_09345
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Entry
HXW90_09345 CDS
T11426
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psyq Pseudomonas sp. Y39-6
Pathway
psyq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psyq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HXW90_09345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psyq03019
]
HXW90_09345
03009 Ribosome biogenesis [BR:
psyq03009
]
HXW90_09345
Enzymes [BR:
psyq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HXW90_09345
Messenger RNA biogenesis [BR:
psyq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HXW90_09345
Ribosome biogenesis [BR:
psyq03009
]
Prokaryotic type
rRNA helicases
HXW90_09345
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QPO19736
LinkDB
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Position
2041056..2042729
Genome browser
AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAF
ALPILHCIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPT
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCTPRAL
AAALLRKATNAQALTLAAIEKERPLVPNNAPRGDRPERSGDRPERGDRERRAPVPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatcttaacccgaacattcttgctgcc
gtcattgcgactggctacgaagaaccttcggcgattcagcagcaatcgatcccgatcatc
atggccggccacgacatgattggccaggcgcaaaccggtaccggtaaaaccgccgcgttc
gccctgcctatcctgcactgcatcgatcctgccaagcgcgaaccgcaagccctgatcctg
gcgccaactcgtgagttggcgctgcaagtagcaaccgcttttgaaacctacgccaagcaa
atgccaggcgtaaccgttgtggccgtctacggcggcgcgccgatgggcccgcaactcaag
gctatccgtaatggcgcacagatcgttgtcgccactccgggtcgtctgtgcgaccacctg
cgtcgtgacgagaaagtcctgtcgaccgtgaaccacctggttctggacgaagctgacgaa
atgttgaagctgggcttcatggatgacctggaagtcatcttcaaggcactgccaccgacc
cgtcagaccgtgctgttctcggccaccctgccgcagtcgatccgtgccattgccgaacgc
cacctgcgcgatccgcaacacgtgaagatccagaccaagactcagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctcggctgtattgagcctgctg
gaagtcgaagacttcgacgcgctgatcatgttcgtgcgtaccaagcaagcgaccctggac
ctggccagtgccctcgaagccaaaggctacaaagccgctgcgctgaacggtgacatcgcc
cagaaccaacgtgagcgcgtgatcgactccctcaaggatggccgtctggacatcgttgta
gcgaccgacgtagctgctcgtggcctcgacgttccacgtatcacccacgtgttcaacgtt
gacatgccttacgatccagagtcctacgttcaccgtatcggccgtaccggccgtgcgggt
cgcgaaggtcgcgcactgctgctggtgacgccgcgtgagcgccgcatgctgcaagtgatc
gagcgtgtgaccgggcagaaggttgctgaagtccgcctgccggatgcccaggccgttctc
gatgcgcgcatcaagaaactgaccaacagcctgtcgccactggtggctgacgctgaatcg
acccacggcgacctgctggaccgcctgaccgccgatatcggttgcaccccgcgtgccctg
gctgcagccctgctgcgcaaagctaccaacgctcaggccttgaccctggcagccatcgag
aaagaacgcccactggtaccgaacaacgcgccacgcggtgatcgtccagagcgttccggc
gaccgtcctgagcgtggtgatcgtgagcgtcgcgctccggtgccattggctgaaggtcgt
gctcgctgccgtaccgcgctgggcgcgcgtgacggtattgctgccaagaacctgctgggc
gctatcctcaacgagggtggcctggcacgtgaagccatcggtcgcatccaggtccgtgac
agcttctccctggtggagctgccggaagacggtctggaaaaactgctgaccaagctgaaa
gacacacgcgttgccggtaagcagctcaagctgcgtcgctaccgcgaagattga
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