Pseudomonas sp. Y39-6: HXW90_26575
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Entry
HXW90_26575 CDS
T11426
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
psyq Pseudomonas sp. Y39-6
Pathway
psyq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psyq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HXW90_26575 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psyq03400
]
HXW90_26575 (recD)
Enzymes [BR:
psyq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HXW90_26575 (recD)
DNA repair and recombination proteins [BR:
psyq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HXW90_26575 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
AAA_11
SH3_13
NAT10_TcmA_helicase
Viral_helicase1
AAA_22
UvrD-helicase
AAA_16
AAA_17
SLFN-g3_helicase
AAA_28
T2SSE
NTPase_1
NACHT
AAA_25
AAA_5
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
QPO22863
LinkDB
All DBs
Position
complement(5890492..5892561)
Genome browser
AA seq
689 aa
AA seq
DB search
MSLSPLPLEALMPLSRAADLVQLFERWVERGWLRALDKAFVGFLHELDPQADPLVLLAAA
LTSHQLGHGHVCLDLFETLKAPDFALSLPPEGDLQTGTMLLPSQLLAGLDGAHWCHALAA
SPLVALAVDGSEAAQSRPLVLSGKRLYLRRYWTYERRIDTALRLRLATAESLAADLPQRL
NGLFDQAPPDGVIDWQKLACALATRGAFSIVTGGPGTGKTTTVVRLLALLQAPAVEAGSP
LRIRLAAPTGKAAARLTESISQQVLSLNVPENVREKIPTQVTTVHRLLGSRPGTRHFRHH
LGNPLPLDVLVVDEASMIDLEMMANLLDALPPHARLVLLGDKDQLASVEAGAVLGDLCRD
AEAGWYSADTRRWLQAVSGEDLGNSGLQEDRDGSHPLAQQVVMLRYSRRFGEGSGIGQLA
RWVNQQNAEEARRLLAAGSHRDLFCVSLKGEHDHALERLVLDGPGDGAEGYRAYLNLLHA
ARPSLDTPRDDPAWTHWAQQLLHAFDAFQLLCAVRKGPWGVEGLNLRITAALRKARLIDG
DEQWYEGRPVLMTRNDYGLGLMNGDIGIALKLPESAGGPHVLRVAFPRNDGQGGVRFVLP
SRLNDVETVYAMTVHKSQGSEFTHTALILPDALNPVLTKELIYTGITRAKRWFSLIEPRG
GVFEEAVRRKVKRLSGLMLELGHEPGKPD
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgtcgccgttaccgctggaggcactgatgcccctcagccgcgccgccgatctg
gtgcaactgttcgaacgttgggtcgagcgtggctggctgcgcgcgctggataaggcgttc
gtcggctttctgcacgaactcgacccgcaggccgaccccttggtgttgctggccgcggcc
ctgaccagccatcaactgggccacggccatgtgtgcctggacctgttcgagaccctcaag
gcaccggatttcgccctgtccctgccgccggaaggcgacctgcaaaccggcaccatgctg
ctgccgtcgcaactgctcgcgggcctggacggcgcgcattggtgccacgccctggccgcc
agccccttggtcgcgttggccgtcgacggcagcgaggccgcgcaaagtcgcccgttggtg
ctgtctggcaaacgcttgtacctgcgccgctattggacctacgaacggcgcatcgacacg
gccttgcgcctgcgcctggccacagcagaaagcctcgccgccgatctgccccagcgcctg
aacggcctgttcgaccaagcgccgcccgatggcgtgatcgactggcagaaactcgcctgc
gccctggccactcgcggggcgttcagtatcgtcaccggcggccccggcaccggcaagacc
accaccgtggtgcgcttgctcgcgctgttgcaggcgccggccgtggaagccggcagcccg
ttgcgcattcgtctggcggcgcccaccggtaaagccgccgcacggcttaccgagtccatc
agccagcaagtgctgtcgttgaatgtgcctgagaacgtgcgggaaaaaatcccgacccag
gtcaccaccgtccaccgcctgctcggcagccgtccgggcacccgccacttccgccatcac
ctgggcaatccattgccgctggatgtgctggtggtggatgaagcctcgatgatcgacctg
gaaatgatggccaacctgcttgatgccttgccgccccacgcacgcttggtgctgctgggc
gacaaggaccaactcgcctcggtcgaggctggcgccgtactcggcgacctgtgccgcgac
gccgaggccggctggtacagcgccgacacccgccgatggctgcaagcggtcagcggtgaa
gacctgggcaacagcggcctgcaggaagaccgcgacggcagccatccgctggcccagcaa
gtggtgatgctgcgctactcgcggcgcttcggcgaaggcagcggcatcggccaactggcg
cgttgggtcaaccagcagaacgccgaagaagcccgacggttactggccgcgggcagccac
cgcgacttgttctgcgtcagcctcaagggcgaacacgaccacgcattggaacgcctggtg
ctggacgggccgggcgatggcgccgagggctaccgtgcctacctgaacctgctgcacgcc
gcgcgcccgtctctcgacaccccgcgtgacgaccccgcctggacccattgggcgcaacaa
ctgctgcacgccttcgacgccttccaactgctctgcgccgtgcgcaagggaccttggggc
gtggaagggctgaacctgcgcatcaccgccgccttgcgcaaagcgcggctgatcgacggc
gacgagcagtggtacgaaggccgcccggtgctgatgacccgcaacgattacggcctgggc
ctgatgaacggcgacatcggcatcgccctgaaattgcccgaaagcgccggtggcccccac
gtgttgcgcgtggccttcccgcgtaacgacggccagggcggcgtgcgctttgtgctgccc
agccggctcaacgatgtggaaaccgtgtacgccatgaccgtgcacaaatcccagggctcc
gagttcacccacaccgcgttgatcctgccggacgcgctgaacccggtgctcaccaaagaa
ctgatctacaccggcatcacccgcgccaagcgctggttcagcctgatcgagccacgcggc
ggggtgttcgaagaagccgtgcggcgcaaggtcaagcgcttgagcgggttgatgctggag
ttggggcatgagcccgggaaacctgactga
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