Pseudomonas sp. Y39-6: HXW90_30705
Help
Entry
HXW90_30705 CDS
T11426
Symbol
tssM
Name
(GenBank) type VI secretion system membrane subunit TssM
KO
K11891
type VI secretion system protein ImpL
Organism
psyq Pseudomonas sp. Y39-6
Pathway
psyq02025
Biofilm formation - Pseudomonas aeruginosa
psyq03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
psyq00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
HXW90_30705 (tssM)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
HXW90_30705 (tssM)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
psyq02044
]
HXW90_30705 (tssM)
Secretion system [BR:
psyq02044
]
Type VI secretion system
Imp/Vas secretion system core components
HXW90_30705 (tssM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QPO23644
LinkDB
All DBs
Position
complement(6781635..6785135)
Genome browser
AA seq
1166 aa
AA seq
DB search
MKAFFSFMIRWVIPLLGLIALSLIIWFVGPLLDVLVPEGRRWALIVLLFAAWLAYRVFRI
LQARRQAAEVMRSLAAQTPADPNSVATAEELTSLRQRMDEALALLKKAKLGGDERRNLYE
LPWYVIIGPPGSGKTTALVNSGLHFPLAAQLGAGAVRGVGGTRNCDWWFTDQAVLLDTAG
RYTTQDSNSPVDKAAWLGFLDLLKKQRSRRPIDGAFIAISLSDLLLGSEAERAAHAAAIR
LRIQELYTQLGVRFPIYLMLTKLDLVPGFMEFFDNLSKEERAQVWGMTFALDDGKHSDSP
LAHLQSEFAGLEQRLNERLVERLQQERDPARRDLIYGFPQQFGALKDCLQSFLEGVFKPN
AFEERVLLRGVYFTSGTQEGSPIDRLIGTMAQSMNLDRQHLARQSGSGRSYFIEKLFSAV
AFAERGLVGVNPQVERRRKWIARGVLAATVALVIVVSSLWWVSYRANQAYIAQVDQKVAP
LGQAVQNLSPAQREVLAVLPLLNAVKHLAGDSPSWSEGLGLYQGDMLEAESASVYRKLLI
AVFAPRLVTRIEEQLHGGGNSDFLYEGLKAYLMLADTEHYDADFIKAWIALDWDRNLPRD
LPADQRQALAEHLQALFERHPPSARLDARLIDDLRRQLQQLPVAQRVYDRVKRQKLPDGI
PDFRLNEAAGRDAALVFSRKSGKPLGEPLSGFFTAKGYRQAFLLSSLNQTGTLAEEQWVL
GHEQADQQNVVSLAADVRRLYFQDYQRQWDALLADIDFVPITSVAQAADVLRVISGPTSP
LKKLLVAVARETDLQAEERQLAAKGVPVEGGVDKLKERLGNLLGQAQPNADAPAAADDPV
TAHFAELNSIVSKNEGEPAAIDGLLADMNALYVQVSAMVGASGDALLGEAKNQAAAAATR
VSLNAERQPPLVQGMVKSVVNSTTNSMMGGVRNQLNAAWVSEVVNVYRQSLAGRYPMSPG
SARDATLDDFGQFFGVGGVMDNYFRKYLQPYVDTSAQTWRWQPGAAQKLGIAPGVLQTFQ
RAATIRDAFFRSGGTQPIVRFELKPVAMDASITQFLLDLDGQQLSYDHGPSRPVAMQWPN
PGSIGVVRISIMPPSPSGRSGVTLDGPWAWFRLLEQSDLTPGNAPDRFNLRLRVDGASIA
YELRANSAFNPFKSRVLSGFSLPERL
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
gtgaaggcgtttttcagtttcatgattcgctgggtgatcccgttgctgggcctgatcgcc
ctgagcttgatcatctggtttgtcgggcccctgctcgacgtgctggtgcccgaagggcgg
cgctgggcgctgatcgtcctgctgtttgcggcctggctcgcctaccgtgtgttccgcatc
ctccaggcccgtcgccaggccgccgaagtgatgcgcagcctggccgcgcaaaccccggcc
gaccccaacagcgtcgccaccgccgaagaactcaccagcctgcgccagcgcatggacgaa
gccctggccctgctgaaaaaagccaagctcggcggggatgagcggcgcaacctctacgag
ctgccgtggtacgtgatcatcggcccgccgggttcgggcaagaccaccgcgctggtcaat
tccgggctgcatttcccgctggctgcccaattgggcgccggggcggtgcggggcgtcggc
ggcacgcgcaactgcgactggtggtttaccgaccaggccgtattgctcgataccgccggc
cgctacaccacccaggacagcaactccccggtggacaaagccgcctggctgggcttcctc
gacctgttgaaaaagcagcgttcgcgccgcccgatcgatggcgcctttatcgccatcagc
ctgtcggacctgctgctgggcagcgaagccgaacgcgctgcccacgcggcggcgattcgc
ctgcgtatccaggagctgtacacccagctgggcgtgcgtttcccgatctacctgatgctg
accaagctcgacctggtgccgggtttcatggagttcttcgacaacctgagcaaggaagaa
cgcgcccaggtgtggggcatgacctttgccctggacgacggcaagcacagcgacagcccc
ctggcgcacctgcaaagcgaattcgccggcctcgaacagcgcctcaacgaacgcctggtc
gaacgcctgcaacaggaacgcgacccggcgcggcgcgacttgatctacggcttcccgcag
cagttcggcgcattgaaagattgcctgcaaagcttcctcgaaggcgtgttcaaacccaac
gcctttgaagagcgcgtcttgctgcgcggcgtgtacttcaccagcggcacccaggaaggc
agcccgatcgatcgcttgatcggcaccatggcccagagcatgaacctggaccgccagcac
ctggcacgccagagcggcagcgggcgcagttacttcatcgagaaactgttcagcgcagta
gcctttgccgagcgcgggctggtgggcgtcaacccgcaggtcgagcggcggcgcaaatgg
atcgcacgcggcgtgctcgcggccaccgtggcgctggtgatcgtggtcagcagcctgtgg
tgggtcagttatcgcgccaaccaggcgtatatcgcccaggtcgaccagaaggtcgcgccc
ctgggccaggccgtacagaacctcagcccggcacagcgcgaagtgctcgccgtgttgccg
ttgctcaacgcggtgaaacacctcgccggggattcgccaagttggtccgagggcctgggc
ctgtatcagggcgatatgctcgaagccgaatccgccagcgtctatcgcaagctgttgatc
gccgtcttcgcgccgcgcctggtgacgcgcatcgaggagcaacttcacggcggcggtaac
tccgacttcctctacgaaggcctcaaggcttacctgatgctcgccgacaccgagcattac
gacgcggacttcatcaaggcctggatcgccctcgactgggaccgcaacctgccgcgcgac
ctgcccgccgatcagcgccaggcgctggccgaacacttgcaggcgttgtttgagcgccac
ccgccgagtgcacgcctcgatgcgcgcttgatcgacgacctgcgtcggcagttgcaacaa
ctgccggtggcccagcgcgtgtatgaccgggtcaaacgccagaaactgcccgacggcatt
ccggacttccgcctcaacgaagccgccggccgcgacgccgcattggtgttcagccgcaaa
agcggcaagccgttgggcgagccgctgagtggtttcttcaccgccaagggctatcgccag
gcgttcctgctgagcagcctgaaccagaccggcaccctggccgaagagcaatgggtgctc
ggccatgagcaggccgaccagcagaacgtggtcagcctggccgccgacgtgcgccgcctg
tacttccaggactaccagcgtcagtgggatgcgttgctcgccgacatcgactttgtgccg
atcaccagcgtggcccaggcggcggacgtgttgcgggtgatttccgggccgacctcgccg
ctgaaaaaactgctggtggcggtggccagggaaaccgacttgcaggcagaggaacgccag
ttggcggccaagggcgtgccggtcgaaggcggcgtggacaagctcaaggaacgcctgggc
aacctgctcggccaggcgcaaccgaacgcggatgcgccggccgctgcggacgacccggtg
accgcgcacttcgccgagctcaacagtatcgtcagcaagaacgaaggcgagccggcggcc
atcgacggcctgctggcggatatgaacgcgctgtacgtgcaagtcagcgccatggtcggc
gccagcggcgatgccttgctcggtgaggccaagaaccaggcggcagcggcggccacgcgg
gtcagcctgaacgccgagcgccagccgccgctggtgcagggcatggtcaagtcggtggtc
aactcgaccaccaacagcatgatgggcggcgtgcgcaaccagctgaacgcggcctgggtc
agcgaagtggtgaacgtgtatcgccagtccctggccgggcgttatccgatgtcgccgggc
agcgcccgtgacgccaccctggatgatttcggccagttcttcggcgtgggcggggtgatg
gataactacttccgcaaatacctgcaaccctacgtcgatacctccgcacagacctggcgt
tggcagccgggcgcggcgcagaaactcgggattgcgccgggtgtgctgcaaaccttccag
cgcgcggcgacgatccgcgatgcgttctttcgctcaggcggtactcagccgatcgtgcgt
ttcgagctcaagccggtggcgatggacgccagcatcacccagttcctgctcgacctcgac
ggccagcaattgagctacgaccacggcccgagccgtccggtggcgatgcaatggccgaac
cccggcagcattggcgtggtgcgtatttcgatcatgccgccgtcgcccagcggtcgctcc
ggcgtgaccctggacggcccgtgggcctggttccgcctgctggaacaatcggacctcacg
cccggcaatgcgccggaccgcttcaacctgcgcctgcgggtcgacggtgcgagcatcgcc
tacgaattgcgtgccaacagcgccttcaacccgttcaagagccgcgtgctcagtggcttc
agcctgccggagcggttatga
DBGET
integrated database retrieval system
