Pseudomonas syringae CC1557: N018_02995
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Entry
N018_02995 CDS
T03014
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
psyr
Pseudomonas syringae CC1557
Pathway
psyr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psyr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
N018_02995 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psyr03021
]
N018_02995 (rpoB)
03400 DNA repair and recombination proteins [BR:
psyr03400
]
N018_02995 (rpoB)
Enzymes [BR:
psyr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
N018_02995 (rpoB)
Transcription machinery [BR:
psyr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
N018_02995 (rpoB)
DNA repair and recombination proteins [BR:
psyr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
N018_02995 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
AHG39265
UniProt:
W0MPS4
LinkDB
All DBs
Position
629338..633411
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFHVRGEN
LNLELVPQRLRGEIAVLDILDDKGKVIVEQGRRITARHINQLEKAGIKELEVPLDYVLGR
TTAKVIVHPATGEIIAECNTELNTEILGKIAKAQVVRIETLYTNDIDCGPFVSDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
EGLVTEEIVFLSAIEEADHVIAQASAAMNDKQELIDELVAVRHLNEFTVKAPADVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKSQLDE
IRKDLNEEFRIVEGATFERLRSALVGRVAEGGAGLKKGQEITNEVLDGLEHGQWFKLRMA
EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMLEEQRKVVELRKFLNEIYNEIGGRQESLEDLSDKEILDLAKNLRNGVPMATP
VFDGAKESEIKAMLKLADMPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtaatggatgtgccgtatctcttggccatccagctggattcgtatcgcgaattcctgcag
gcgggagcgaccaaagatcagttccgcgacgtcggtctgcatgcagccttcaaatccgtt
ttcccgatcatcagctactccggcaatgctgcgctggagtatgtaggttatcgcttgggc
gaaccggcatttgatgtcaaggaatgcgtgctgcgcggtgtgacttacgcagtacctctg
cgggtcaaggtccgtctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatccccctgatgactgaaaacggtaccttt
gtaatcaatggcaccgagcgcgttatcgtgtctcagcttcaccgttcgccaggcgtattc
ttcgaccacgaccgtggcaagacgcacagctccggcaagctgctttactccgctcgtatc
attccttaccgcggttcgtggctggacttcgagttcgatccgaaagactgcgtattcgtc
cgtatcgaccgtcgtcgcaagctgcctgcgtccgtacttctgcgcgcactgggttacacc
accgagcaagtgctcgatgctttctataccaccaacgtattccatgttcgcggcgaaaac
ctgaacctggaactggtgcctcagcgcctgcgtggtgaaattgccgttctggatattctg
gacgacaagggcaaggtcattgtcgagcagggtcgtcgtatcactgcccgtcacatcaac
cagctggaaaaagccgggatcaaagagctggaagtacctctggactacgtcctgggccgt
acaactgccaaggtcatcgtgcatccggctacgggcgagatcattgccgagtgcaacacc
gagctgaacactgaaatcctcggcaagattgccaaggctcaggttgttcgcatcgaaacg
ctgtacaccaacgatatcgattgcggtccattcgtatccgacacgttgaagatcgactcc
accagcaaccaactggaagcgctggtcgagatctatcgcatgatgcgtcctggcgagcca
ccgaccaaggatgctgccgaaaccctgttcaacaacctgttcttcagtcctgagcgttat
gacctgtctgctgtaggccggatgaagttcaaccgtcgtatcggtcgtaccgaaatcgaa
ggttcgggcgtgttgtgcaaggaagatatcgtcgcggttctcaagactctcgttgatatc
cgtaacggcaaaggcatcgtcgatgacatcgaccacctcggtaaccgtcgtgttcgctgc
gtaggcgagatggccgagaaccagttccgtgtaggtctggtccgcgtcgagcgtgcggtt
aaagaacgtctgtccatggcagaaagcgaaggcctgatgcctcaggacctgatcaatgcc
aagcctgtcgcggcagcggtcaaagagttctttggttccagccagctttcccagttcatg
gaccagaacaacccgctttccgagatcactcacaagcgtcgtgtttcggcactcggccct
ggcggtctgacccgtgagcgcgctggctttgaagttcgagacgttcacccgactcactac
ggtcgcgtgtgccctatcgaaacgccggaaggtccgaacatcggcctgatcaactccctc
gcggcttatgctcgcaccaaccagtatggtttccttgagagcccgtaccgtgttgtgaag
gaaggtctggtaaccgaagaaatcgtattcctttcggcgatcgaagaagctgaccacgtc
attgcccaggcctcggccgcaatgaacgacaagcaagagctgatcgacgagctggttgct
gtgcgtcacttgaacgaattcaccgtcaaggcgccagccgacgtcaccctgatggacgtt
tcgcccaagcaggttgtctcggtagcagcttcgctgatcccgttcctcgagcacgacgac
gccaaccgtgcgttgatgggttcgaacatgcagcgtcaggccgtacccaccctgcgtgcc
gacaagccgctggtaggtaccggcatggagcgcaacgttgctcgcgactccggcgtttgt
gtcgtggctcgtcgtggcggcgtgatcgactcggttgacgccagtcgtatcgtggttcgc
gttgctgatgacgaagttgaaacaggtgaggctggtgtagatatctacaacctgaccaaa
tacacccgttcgaaccagaacacctgcatcaaccagcgtccgctggtcagcaagggtgac
cgtgttcagcgtagcgacatcatggccgacggcccgtccaccgatatgggtgaactggca
ctgggtcagaacatgcgcatcgcgttcatggcctggaacggcttcaacttcgaagactcc
atctgtctctctgagcgtgtcgttcaggaagaccgcttcaccacgatccacattcaggaa
ctgacctgtgtggcgcgtgacaccaagcttgggcctgaggaaatcacagctgacatcccg
aacgtgggtgaagctgctctgaacaagctggacgaagccggtattgtttatgtaggtgcc
gaagttggcgctggcgacatcctggtaggcaaggtcactccgaaaggcgagacccagctg
acgccggaagaaaaactgttgcgagcgatcttcggcgagaaggccagcgacgttaaagat
acctccctgcgcgtgcctaccggcaccaaaggtactgtcattgacgtacaggtcttcacc
cgtgatggtgttgagcgtgatgcacgtgcactgtccatcgagaagtcgcaactcgacgag
atccgcaaggatctgaacgaagagttccgtattgtcgaaggcgctactttcgaacgtctg
cgctctgcgctggtgggtcgtgtagcagaaggcggtgctggcctcaaaaaaggtcaggaa
atcaccaacgaagtgctcgacggtcttgagcatggtcagtggttcaagctgcgcatggct
gaagacgctctgaacgagcagcttgagaaagcgcaggcttatatcgttgatcgtcgtcgt
cttctggatgacaagttcgaagacaagaagcgcaaactgcagcaaggcgatgatctggct
ccaggcgtgctgaaaatcgtcaaggtttacctggctatccgtcgtcgcatccagccgggc
gacaagatggccggtcgtcacggtaacaagggtgtggtctccgtgatcatgccggttgaa
gacatgccgcacgatgccaatggcacgccggtggacatcgtcctcaacccgctcggtgta
ccttcgcgtatgaacgtgggtcagattctcgaaactcaccttggcctcgcagccaaaggt
ctgggcgagaagatcaaccgcatgctcgaagagcagcgtaaagtggttgagctgcgcaag
ttcctgaacgagatctacaacgagatcggtggtcgccaggaaagtctggaagacctctcc
gacaaggagatcctcgatctcgcgaagaaccttcgcaacggcgtgccaatggctactccg
gtgttcgacggtgctaaagaaagcgaaatcaaggcaatgctcaaactggcagatatgccg
gaaagcggccagatgcagctgtttgacggtcgtactggcaacaagtttgagcgcccggta
acggtcggctacatgtacatgctgaagctgaaccacttggtggacgacaagatgcacgcg
cgttccactggttcgtacagcctggttacccagcagccgctgggtggtaaggcacagttc
ggtggtcagcgtttcggggagatggaagtgtgggcgctggaagcatacggcgcggcgtac
actctgcaggaaatgctcacagtgaagtcggacgatgtgaacggtcgtaccaagatgtac
aaaaacatcgtggacggcgatcaccgtatggagccgggcatgcccgagtctttcaacgtg
ttgatcaaagaaatccgttcgctcggtatcgatatcgatctggaaaccgaataa
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integrated database retrieval system
