Pseudomonas syringae CC1557: N018_03000
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Entry
N018_03000 CDS
T03014
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psyr
Pseudomonas syringae CC1557
Pathway
psyr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psyr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
N018_03000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psyr03021
]
N018_03000
03400 DNA repair and recombination proteins [BR:
psyr03400
]
N018_03000
Enzymes [BR:
psyr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
N018_03000
Transcription machinery [BR:
psyr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
N018_03000
DNA repair and recombination proteins [BR:
psyr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
N018_03000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
DUF3150
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
AHG39266
UniProt:
W0MR15
LinkDB
All DBs
Position
633476..637675
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKVKVRIHETVNDRDGGSVKNTRIVDTTVGRALLFQVVPAGLSYDVVNQPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIDAATEE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMSNLSKERVIDRHGVEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEVDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEEIIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGHLVAVSRSGELAIADDFGRERERYKLPYGAVISVKEGDKVDAGSIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM
VGLDGKDLLLPGTDVPAQYFLPANALVGVADGAQIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTHVLVENERLGADDKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRREMDKPTR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttactgaatttgctgaaaaaccagggtcaggtcgaagagttcgatgcaatc
cgcatcgggcttgcatcgcctgagatgatccgttcctggtcgttcggtgaagttaaaaag
ccggaaaccattaactaccgtacgttcaagcctgagcgtgacggtctgttctgcgccaag
atctttggcccggtaaaagattacgagtgcctgtgcggtaagtacaagcgcctgaagcat
cgcggcgtcatctgcgaaaaatgcggtgttgaagtggcgctggccaaggttcgtcgcgag
cgtatggctcacatcgaactggcttcgccggttgcccatatctggttcctgaaatcgctg
ccgtcccgtatcggcttgctgatggacatgaccctgcgtgatatcgaacgcgttctctac
ttcgagagctatgtcgttatcgatccaggcatgaccacccttgaaaaaggtcagctgctg
aacgacgagcagtacttcgaagctcttgaagagttcggtgatgacttcgacgcccgcatg
ggtgctgaagctgtccgcgaactgctgcacgctatcgatctggaacacgaaatcggccgc
ctgcgtgaagaaattccgcaaaccaattccgaaaccaagatcaagaagctgtccaagcgt
ctgaagctgatggaagccttccagggttccggcaacctccctgagtggatggtgctgacc
gttctgccggttctgccgccagatctgcgtcctctggttccgcttgacggtggccgtttc
gcgacgtccgatctcaacgatctgtatcgtcgagtgatcaaccgtaacaaccgtctgaag
cgtctgctggacctgtctgctcccgatatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcagtcgatgctctgctcgacaacggtcgtcgtggtcgcgccatcaccggttcgaac
aagcgtcctctgaaatccctggctgacatgatcaagggtaagcagggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactcgggtcgttcggtaattaccgtaggtccgacc
ctgcgtctgcaccagtgcggtctgccgaagaaaatggctctcgagctgttcaagccgttc
atttttggcaagctggaaatgcgtggcctggccacgaccatcaaagctgccaagaaaatg
gtcgagcgcgagctgccagaagtctgggacgttcttgccgaagtcattcgtgaacaccca
gtgctcctgaaccgtgcgccaacgcttcaccgtcttggcatccaggcatttgaaccggtt
ctgatcgaaggtaaggctatccagctgcacccgctggtctgcgctgcgtacaacgccgac
ttcgacggtgaccagatggctgttcacgtgcctttgacgctggaagcccagcttgaagcg
cgcgcactgatgatgtcgaccaacaacatcctgtcgccagccaacggtgagccaatcatc
gttccttcgcaggacgttgtactgggtctctactacatgactcgtgaagcgatcaacgcc
aagggcgaaggtcgtgtgtttgcggatctgcaggaagtcgaccgcgtattccgtgccggc
gaagcggctctgcacgccaaggtcaaggtccgcatccacgaaacggtcaacgaccgtgac
ggtggcagcgtcaagaacacccgtatcgtcgacaccactgtcggccgtgcgctgctgttc
caggtggttccggccggcctgtcctacgacgtcgtcaaccagccgatgaagaagaaggcg
atttccaagctgatcaaccagtgctaccgcgtggttggtttgaaagagaccgtgatcttc
gctgaccagttgatgtacaccggttttgcctactcgaccatttcgggtgtttccatcggc
gttaacgacttcgttatcccggatgaaaaagcccgcatcatcgacgcggccaccgaagaa
gttaaagagatcgaaagccagtacgcttcgggcctggttactcagggcgagaagtacaac
aaggtaatcgacctttggtccaaggcgaacgacgaagtctcgaaagcgatgatgtcgaac
ctgtccaaagaacgcgttatcgatcgtcacggcgtcgaagttgatcaggaatccttcaac
tcgatgtacatgatggctgactccggtgcgcgtggttctgctgcccagatccgacagctg
gccggtatgcgtggtctgatggccaagcctgacggctccatcatcgaaacgccgatcact
gcgaacttccgtgaaggtttgagcgtacttcagtacttcatctccactcacggtgctcgt
aagggtcttgcggataccgccttgaaaaccgctaactcgggttatctgactcgccgtctg
gtagacgtggctcaggatctggtcgttaccgaagtggattgcggtaccgaacacggtctg
ctaatgactccgcatattgaaggcggtgacgttgtagaaccgctgggtgagcgcgtattg
ggtcgagttatcgcccgtgacgtgttcaagccgggtacggaagaaatcatcgtgcctgct
ggcaccctggttgacgagaagtgggtcgagttcatcgagctgaacagcatcgacgaagtg
atcgttcgttcgccaatcagctgtgaaacccgctatggcatctgcgccaagtgctacggt
cgcgacctggcacgtggtcaccaggtcaacatcggtgaagctgtcggcgtaatcgctgca
cagtcgatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggtgcg
gcaagccggacctcggcagccgacagcgttcaggtgaagaatggcggtactgtccgtctg
cataacctgaagcacgtagagcgtgttgacggtcacctggttgcggtatcccgttccggt
gagctggcaatcgctgatgacttcggtcgtgagcgtgagcgttacaagctgccatacggt
gcagtgatttcggtgaaggaaggcgacaaggtcgacgctggctctatcgtagccaagtgg
gatccgcacactcacccaatcgtcaccgagatgaaaggtactgttacctacgtcggcatg
gaagaaggcatcacgatcaagcgtcagacagacgaattgaccggtatgaccaacattgaa
gtgcttgacgccaaagaccgcccggctgctggcaaggacattcgtcctgccgtgaagatg
gtgggtctggatggcaaggatctgctgttgccaggtactgacgtaccggcccagtacttc
ctgccggctaacgcccttgttggtgtagctgacggtgcacagatcgcgatcggtgatgtt
atcgctcgtatcccgcaggaaacgtcgaagactcgtgacatcaccggtggtctgccgcgt
gttgccgacctgttcgaagcgcgtcgtccgaaagaggcgtcgatccttgcagaagtcagc
ggtaccatcgcattcggtaaagagaccaagggcaagcgccgtctggtcattaccccgaat
gacggtagcgatccgtacgaggagctgattccaaagtggcgtcacctgaacgtcttcgaa
ggcgaacaagtgaaccgcggcgaagttatctccgacggtcctagcgatccacacgacatc
ctgcgtctgctgggtgtgagtgcgctggccaagtacatcgtcaacgagattcaggacgta
taccgtctgcaaggcgtgaagatcaacgacaagcacatcgagaccattttgcgtcagatg
ctgcgtaaagttgagattgccgagtctggcgattccagtttcatcaagggcgaccagatg
gaactgactcacgtactggtagaaaacgagcgtttgggtgcggacgacaagtttgtctcc
aaattcactcgtgtgttgctgggtatcaccaaggcatcgctgtccaccgaatcgttcatt
tccgcggcctccttccaggagacaacccgcgtactgaccgaagcggctgtgacaggcaag
cgcgattacctgcgcggcctgaaggaaaacgtggttgtgggtcgtctgatcccggccggt
accggtctggcttatcacagcgagcgcaagcgccgccgtgaaatggacaaaccgacccgt
gtcagcgcaagcgaagtagaagctgctctgaccgaggcgttgaactccagcggtaactaa
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