Pseudomonas syringae CC1557: N018_03845
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Entry
N018_03845 CDS
T03014
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
psyr
Pseudomonas syringae CC1557
Pathway
psyr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
N018_03845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psyr03400
]
N018_03845
Enzymes [BR:
psyr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
N018_03845
DNA repair and recombination proteins [BR:
psyr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
N018_03845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AHG39417
UniProt:
W0MLV5
LinkDB
All DBs
Position
794710..798402
Genome browser
AA seq
1230 aa
AA seq
DB search
MNNLSLPLALRFPLRGSQLIEASAGTGKTFTISALYLRLVLGHGAEPSGFGRELLPPQIL
VVTFTDAATKELRDRIRTRLAEAARFFRDEISAPDGLIADLREQFEAEQWPACASRLDIA
AQWMDEAAVSTIHSWCQRMLREHAFDSGSLFTQTLETDHSDLLGEVLRDYWRRFCYPMSG
DALTWVRENWSGPAALLPRVRGLFGRERNTDNREPAELIEASLQERRAALVALKAPWAAW
ADELYAICQDAVARKAVDGRKMQERYFKPWFEKLSAWAADEHEETLDLGTGFTRLTPEGV
AEAWKSDPPSHPAFEAMAGLKSALDALPKPDAAVLQHAAQWVSARFEEEKRRRAEMGFDD
MLLRLDAALRSAGGERLATLIREQFPVALIDEFQDTDPVQYRIFESIYRLEDNDEQTGLF
LIGDPKQAIYAFRGADIYTYLRARHATHGRWHTLDTNFRSSHAMVESVNHVFMRAEQRPE
GRGAFLFREGGDNPVPFSSALAQGRKETLELDGSPLTALTVWHLESEQPVSGVAYRQQLA
ASCASEIVRLLNAGQENRAGFVAPDKPLRGLRPADIAILVRDGKEAQAVRSQLSARGVRS
VYLSDKDSVFAAQEAHDLLSWLKACAEPDSERMLRAALACITLDLPLAELERLNQDELAW
EQRVMQFRRYRDVWRIQGVLPMLRRLLHDFALPQTLISRTDGERVLTNLLHLSELLQQAA
AELDGEQALIRHLSDHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLQYPLVFLPFIC
SSKPVDGSRLPLQFHDAEGRAQISLQPTEDLIQQSDNERLAEDLRLLYVALTRSEHACWL
GVADLKRGNANSSMLHRSALGYLLGGGAALPESAALKIWLRELAEGCAAIALQPVPEPTV
DSFVAPRNEASLVKLLVPKRRAAENWWIASYSALRIGDTVTAGADESPDSPQAQKLFDDE
RLDPEAPRDILTSGGDIHRFPRGPNPGTFLHGLLEWAGNHGFALTAHNMALIRDAVGSRC
NRRGWAGWIETLRDWLHHLLNMPLRLSPGTTPVALGDLSQPNQYRVEMEFWFASNNVNVA
QMDALVRRFTHDNAPRAATETVSLNGMFKGFIDLTFEHEGRYYVADYKSNWLGADDDAYT
ELAMEASILDNRYDLQYVLYLLALHRQLKARLADYDYDQHMGGALYLFLRGSRSVSQGAY
FTRPPRELIESLDLLFQGKPLPHDLSGALA
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atgaataacctgtcactccctctggcgttacgctttccattacgcggcagtcagttgatc
gaggccagcgccgggactggcaagacattcaccatctcggcgctgtacttgcgtctggtg
cttggccatggcgccgaaccgtcaggttttggccgtgaactgctgcccccgcaaatcctg
gtggtgaccttcacggatgcagcaaccaaggaactgcgcgatcggattcggacccggctg
gccgaggccgctcggttctttcgtgacgagatttcagcgccagatggtctgattgccgac
ttgcgcgagcaattcgaggccgaacagtggccagcctgcgccagccgactggacattgcc
gcgcagtggatggacgaagcagccgtttcgacgatccacagctggtgccagcgcatgctg
cgtgagcacgcattcgacagtggcagtctgttcacccagacgctggaaaccgatcacagt
gatttgctcggcgaagtgctgcgcgattactggcggcgattctgttaccccatgagtggc
gacgcgttgacctgggtgcgggaaaactggagcggtccggcggcgctgttgccgcgtgtg
cgaggcctgtttggccgcgaacgcaatacggacaatcgagagcccgccgaactgatcgaa
gcatcattgcaggaacgtcgagctgcattggtcgcccttaaagcgccgtgggccgcttgg
gcagacgagctatacgcaatctgccaggacgccgtcgcgcgcaaggcggtcgatggtcgc
aagatgcaggagcgttacttcaaaccgtggttcgaaaaactctccgcatgggccgccgac
gaacatgaagaaacgctggatctgggcaccggtttcacgcgcctgacgccagaaggcgtg
gccgaggcctggaaaagcgatccgccttcgcacccggcgttcgaggcgatggccgggctc
aagtctgcgctcgatgcgctacccaaaccggatgctgcggtgttgcagcacgctgcgcag
tgggtcagcgcgcgctttgaagaagagaaacgccgacgcgccgagatgggtttcgacgac
atgctgctcaggctcgacgctgccttgcgcagtgctggcggcgagcgcctggcgaccctg
atccgcgagcagtttccggtggcgctgatcgatgaattccaggacaccgacccggttcaa
taccgcatcttcgagagtatctatcgtctcgaagacaacgacgagcaaaccggcctgttc
ctgatcggcgaccccaagcaggcgatctacgcgtttcgcggtgccgacatctacacctac
ctgcgcgcccgtcacgctacccacggtcgatggcacacactggacaccaacttccgttcg
agccacgccatggttgagtcggtcaatcatgtcttcatgcgcgcagagcagcgtccggaa
gggcgtggcgcattcctgttccgcgaaggcggcgacaacccggtgccgttctccagtgcg
ctggcccagggtcgtaaagagacgttggagctcgatggcagcccactgacggcgttgacg
gtctggcatctggaaagcgagcagccggtgtccggtgtggcctatcgacagcaactggcc
gccagttgcgccagcgagatcgtgcgcctgctcaacgcgggtcaggaaaaccgtgctggc
tttgtcgcgcctgacaagccactgcgcgggctgcgtccagccgacatcgcgattctggtc
cgcgacggcaaagaagcgcaggccgtgcgcagtcaactgtcggcacggggcgtgcgcagc
gtgtacctgtcggacaaggattcggtattcgctgcccaggaagcccacgacctgttgtca
tggctcaaggcctgcgcagaaccggactccgagcgcatgctacgggcagcgctggcctgt
atcactctggacctgccattggccgagcttgagcgtctgaatcaagacgaactggcgtgg
gagcagcgcgttatgcagttccgccgctaccgcgacgtatggcgcattcagggcgtgctg
ccgatgctgcgtcgtttgctgcacgactttgccctgccgcagacactgatctcgcgtacc
gacggcgagcgggtgctgaccaacctgctgcacttgtccgagttgctgcaacaggcggct
gcggaactggatggcgaacaagcgttgattcgtcacctgagcgatcacctggcgctgtcc
ggtcaggcgggagaagagcagatcctgcgcctggaaagcgacgagcaactggtcaaagtg
gtgaccattcacaaatccaaggggctgcaatatccgctggtgttcctgccgttcatttgc
tcgtccaaaccggtcgatggcagtcgtctgccgctgcagtttcacgatgccgagggccgg
gcgcagatcagtttgcagcccaccgaggacttgattcagcagtcggataacgagcgtctg
gccgaggacctgcgtttgttatacgtcgcactgactcgctcggaacacgcctgctggctg
ggcgtcgccgatctcaagcgcggtaatgccaacagctcgatgctgcaccgctcggcgctc
ggttatttgctgggcggcggcgcggcgttgccagagtcggcggccttgaaaatctggctg
cgtgaactggccgagggctgcgcagcgattgccttgcagcccgtccctgagcccaccgtc
gacagctttgtcgcgccccgcaacgaggcttcactggtcaagctgctggtgcccaaacgc
cgtgctgccgagaactggtggatcgcgtcgtacagcgctttgcgaatcggcgacacggtg
accgccggtgccgacgagtcgccggacagcccgcaggcccagaagctgtttgacgatgaa
cgtctcgaccctgaagcacctcgcgacatccttaccagcggcggtgatatccatcgtttt
ccacgcggcccgaaccccggcacctttctgcatggcttgctggagtgggcgggcaaccac
ggttttgcgctcacggcgcataacatggcgctgataagagatgctgttggcagtcgctgc
aatcgacgcggttgggctggctggatcgagaccctgcgcgactggctgcatcacttgctg
aacatgccgttgcgtctttcgcccggcactacaccagtggcgctgggcgatctgagtcaa
ccaaatcagtaccgcgtcgaaatggagttctggttcgccagcaacaacgtcaacgtggcg
caaatggatgcccttgtgcgccgcttcacccacgacaatgcgccgcgtgccgcgaccgaa
accgtctcgctcaacggcatgttcaaaggcttcatcgacctgacgttcgagcatgaaggt
cgttactacgtcgccgactacaagtccaactggctgggcgccgacgacgatgcctacacc
gagctggcgatggaggcctcgatactcgacaaccgctacgacctgcaatatgtcctgtac
ctgctggcgttgcatcggcagctcaaggcgcggctggccgattatgattacgaccagcac
atgggcggcgcgctttacctgttcctgcgcggcagtcgatctgtgtctcaaggtgcctat
ttcacccgcccgcctcgcgaattgatcgaaagcctggacttgctgtttcagggcaagcct
ttaccgcatgacctctcgggagcattggcatga
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