Pseudomonas syringae CC1557: N018_06350
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Entry
N018_06350 CDS
T03014
Name
(GenBank) RNA helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
psyr
Pseudomonas syringae CC1557
Brite
KEGG Orthology (KO) [BR:
psyr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psyr03019
]
N018_06350
Enzymes [BR:
psyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
N018_06350
Messenger RNA biogenesis [BR:
psyr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
N018_06350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
AAA_25
NACHT
T2SSE
Motif
Other DBs
NCBI-ProteinID:
AHG39884
UniProt:
W0MMU1
LinkDB
All DBs
Position
1318456..1322367
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AA seq
1303 aa
AA seq
DB search
MTDESPSIDQLLKNLDQAMISERHRLRRQLHELRKKPDEVKLAQWVARVQASCAQVTARR
ESVPAIRYDDNLPIAAKRDEIKEALLKHQVLIIAGETGSGKTTQLPKICLEIGRGQHGLI
GHTQPRRIAARSVASRVAEEIGTPLGALVGYQVRFEDQSDSNTLIKLMTDGILLAETQHD
RFLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLQRFSEHFNDAP
VIEVSGRTFPVDVWYRPLTSEQDEEGNSVEDDLTVDQAILATLDELAAFERSERKSPGDV
LVFLPGEREIRDAAEMLRKAQLRHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET
SLTVPGIRYVIDTGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGLCVRLYS
EEDFIGRPEFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQELS
AVNRENQLTPLGRQLARLPVDPRMGRMLLEAAKQGSLQEVLIVASAMSVQDVRERPPERQ
QAADQAHAQWKDADSDFAGLVNLWRGFEEQRQTLTASPLRNWCRRNFLNYLRLREWRDSH
RQLSLICRDLQLTVNKEPADFPKFHKAILSGLLSQIGQKADEGDYLGARQRRFWIHPSSG
LGKKRPQWLMAAELVETTKLYARMVAKIDSDWIEPLAGHLIKKNHFEPHWEKKRGQVVAF
EQITLFGLIVVGRRPVHYGPIDPVVSRELFIREGLVRGDILSRAKCLTANTRLLEQLDEL
EAKARRRDILADEDTLYSFYEARIPAEIHQTATFDSWYKTESQKNPQLLIMREEDVLARE
ASEVTAAQYPDTLSLGDLSLSLSYHFEPNHPRDGVTLRVPAPLLLSLPAERLEWLVPGLL
ETKCIALVRNLPKAVRKNFVPVPDFIKAALQRITFGDGSLPQALGRELLRMTGARVSDEA
WAEAAQQLEGHLKMNLEIVDGNGKFLGEGRDLAELTARFAEASQAALAVPQGAKHQQPVE
AKVFAPVAQKTQQNIAGLSMTVYPALVEEGGTVKEGRFSTQAEAEYQHRRALQRLLLQQL
AEPAKFLRNKLPVQTELALLYRELGRIDALVEDILLASLDSCVLEGEAELPRDGAGLLSL
AERKRADWTEHAERLAKLTLEILKLWHGLQKRFKGKIDLAQAVALNDIKAQLGKLVYPGF
VRETPAVWLKELPRYLRAIEMRLEKLPGQVQKDRVWSIELAGLWAQYQARADKHAQEGKR
DPELALYRWWMEEYRVSLFAQQLGTRMPVSDKRLSKQWSQVEG
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgaatcgccctctatcgaccaactcctgaaaaaccttgaccaagcgatgatc
agtgaacgccatcgtctgcgtcgccagttgcatgagttgcgcaagaaacccgacgaggtg
aagctggcgcagtgggtggctcgggttcaagcgtcgtgcgcacaggtgacggcgcggcgt
gaaagcgtgccggcgattcgttatgacgacaacctgcccatcgccgccaagcgcgatgaa
atcaaagaggcgttgctcaagcatcaggtgctgatcattgccggcgaaaccggctcgggc
aaaaccacccagttacccaagatctgtctggaaatcggtcgcgggcagcacggtctgatc
gggcatacccagccgcgccggatcgccgcacgcagcgttgccagccgggtcgccgaggaa
atcggtacgccgctgggcgctctggtcggttaccaggtgcgctttgaggatcaaagcgac
agcaataccctgatcaagctgatgaccgacggtattctgctggccgaaacccagcatgac
cgctttcttgagcgctacgacacgatcatcgtcgacgaagcccacgaacgcagcctgaac
atcgactttctgctgggttacctgaaaaccctgttgccgcgtcgcccggacctcaaggtc
attatcacctcggccaccattgacctgcagcgcttttccgagcacttcaacgatgcgcct
gttatcgaggtgtctggccgtacgtttcctgtcgacgtctggtatcgcccgctgaccagc
gagcaggacgaagagggcaacagcgtcgaagacgacctgaccgtcgatcaggcgattctg
gccacgctggatgaactggctgcctttgagcgcagcgagcgcaagagccccggcgatgta
ctggtgttcctgcccggcgagcgcgaaattcgcgatgcggccgaaatgctgcgcaaggcc
cagctcagacacaccgagattctgccgctgtacgcgcgcctttcgcctgccgaacagcag
cgcatctttcagtcgcatcccggccgtcgcgtggtgctggccaccaacgtcgccgaaacc
tcgttgaccgtgccgggcatccgctacgtgatcgataccggcacggcgcgcatcagtcgc
tacagctaccgcgccaaggttcagcgcctgccgatcgaagcggtttcccaggccagcgcc
aaccagcgtaaaggccgttgcgggcgtgtcgagcccgggctttgcgtgcgcctgtacagc
gaagaggatttcatcggtcggccggaatttaccgatcccgagattctgcgcaccaacctg
gcggcagtgatcctgcaaatgctgcacctgcggctcggcgaaatcactgatttcccgttc
atcgagccgccggacggcaaggcgatcagcgacggtttcaacctgttgcaggagctgtcg
gcggtcaatcgcgagaatcagctgaccccgctgggccgtcaattggcgcgcttgccggtg
gacccgcgcatggggcgcatgctgctggaagccgcgaagcagggcagcctgcaagaagtg
ctgatcgtcgccagcgccatgtccgtgcaggacgtgcgcgagcggccacccgagcgccag
caggctgccgatcaggcccacgcgcaatggaaagacgccgactctgacttcgccgggctg
gtcaatctgtggcgcggcttcgaagagcagcgccagaccctgacggccagcccgttgcgc
aactggtgccgacgcaactttctgaattacctgcgcctgcgcgaatggcgtgattcccat
cgacaactgagcctgatctgtcgcgacctgcaactgacggtcaacaaggaaccggccgat
ttcccgaaattccacaaagccattctgtcgggcctgctgagccagatcgggcaaaaggcc
gacgagggcgactacctaggggcgcggcaacgacgcttctggattcacccgtcttccggg
ctgggcaagaagcgtccgcagtggctgatggctgccgaactggtggaaaccaccaagctg
tatgcgcgcatggtcgcgaagattgattcagactggatcgagccgctggccgggcacctg
atcaagaagaaccatttcgagccgcactgggagaagaagcgcgggcaggtggttgcgttc
gagcagatcaccctgttcggcctgatcgtggtcggccgtcgcccggtgcattacgggcct
atcgacccggtggtatcgcgcgaattgttcattcgtgaagggctggtgcgcggcgacatc
ttgtcccgggccaaatgcctgactgccaatacccgcctgctggaacaactcgacgaactg
gaagccaaggctcgacgtcgcgatattctggccgacgaagacacgttgtacagcttctat
gaagcgcggattccggccgagattcaccagacggccaccttcgacagctggtacaagacc
gaaagccagaagaacccgcaacttctgatcatgcgcgaagaggacgtgctggcccgcgaa
gccagtgaagtgactgccgcgcaatacccggacaccctgagtctgggcgatttgagcctg
tcgctgagctatcacttcgagcccaatcacccacgcgatggcgtgaccttgcgggtgcca
gcgcccctgctgttgtcgttacctgccgagcgtcttgaatggctggtgccaggtttgctg
gaaaccaaatgtattgcgctggttcgcaacctgcccaaggccgtgcgcaagaatttcgtg
ccagttccggacttcatcaaggcggccctgcaacgcatcacgttcggcgacggctcgctg
ccccaggcgttgggccgtgagttgctgcgcatgaccggcgcgcgggtcagtgacgaagcc
tgggccgaggctgctcagcagctggaaggccacttgaagatgaacctggaaatcgtcgac
ggtaacggcaagtttctcggtgaagggcgtgatctggctgaactgacagcgcgtttcgcg
gaagccagtcaggcggcgctggcggtgccgcaaggcgcgaaacatcagcagccggtggag
gccaaggtcttcgccccggtggcgcagaagactcagcaaaacattgccgggctgtcgatg
acggtctatccggcgctggttgaagagggcggtactgtcaaggaaggccgcttctccact
caggcggaagccgagtatcagcatcggcgtgccttgcagcgcttgttgttgcagcaactg
gccgagcccgcgaagtttctgcgcaacaagttgccggtgcagaccgaactggccttgttg
tatcgcgagcttgggcgcattgatgcactggtcgaagacatcctgctggccagtctcgac
agttgcgtgctggaaggtgaagccgaactgccgcgtgatggcgcaggcttgctgtcgctg
gccgagcgcaagcgtgccgactggaccgaacacgccgagcggctcgcgaagctgaccctg
gaaattctcaagctgtggcacggtctgcaaaagcgtttcaagggcaagatcgacttggcc
caggccgtggcattgaacgatatcaaggcgcagctcggcaaactggtgtaccccggcttt
gtccgtgaaacaccggctgtctggctcaaggagttgccacgttacctgagggctatcgaa
atgcgtctggaaaaactgccgggtcaggtgcagaaggaccgggtctggagcatcgaactg
gccggcctttgggcgcagtatcaggcgcgggccgacaagcatgcacaggaaggcaagcgt
gatccggaactggcgctgtatcgctggtggatggaagagtatcgcgtctcgctgttcgct
cagcagttgggcacccggatgccggtgtctgacaaacggttgagcaagcagtggagtcag
gtagagggctga
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