Pseudomonas syringae CC1557: N018_07325
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Entry
N018_07325 CDS
T03014
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psyr
Pseudomonas syringae CC1557
Pathway
psyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N018_07325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psyr03019
]
N018_07325
03009 Ribosome biogenesis [BR:
psyr03009
]
N018_07325
Enzymes [BR:
psyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N018_07325
Messenger RNA biogenesis [BR:
psyr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N018_07325
Ribosome biogenesis [BR:
psyr03009
]
Prokaryotic type
rRNA helicases
N018_07325
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEM4
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
AHG40071
UniProt:
W0MTE6
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All DBs
Position
1538636..1540315
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AA seq
559 aa
AA seq
DB search
MTQEIGGFAAFELHPNILAAVIATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAF
ALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPET
KQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCSPRAL
AAALLRKATNGQALTLAAIERERPLVPNNAPRGDRPERSGSSDRGDRPERERRAPVPLAE
GRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLTK
LKDTRVAGKQLKLRRYRED
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggcttcgccgcttttgaacttcatccaaatatcctcgcagcc
gttatcgccactggctacgaagagccttcggccattcagcagcagtcgatcccgatcatc
atggccggccacgacatgatcggccaggcgcaaaccggtacaggtaaaaccgccgcgttc
gcactgcctatcctgcatcgtatcgacccgagcaagcgcgagccgcaagcactgatcctg
gccccgacccgcgaactggcacttcaggtggccaccgcgttcgagacctacgctaaacaa
atgccgggcgtgaccgttgtagcggtctacggcggcgcgcctatgggccctcagctcaag
gcgatccgcaatggcgcacagatcgttgtcgccactccaggccgtctctgcgaccacctg
cgtcgtgacgagaaagtcctggcgaccgtgaaccatctggttctcgacgaagcggacgaa
atgctcaaactgggtttcatggacgacctggaagtcatcttcaaggccatgccggaaacc
aagcagaccgtattgttctcggctactttgccgcagtcgatccgtgccatcgccgagcgc
cacttgcgcgatccgaagcacgtcaagatccagaccaagactcagaccgttaccgcgatc
gagcaggctcacctgctggttcacgctgaccagaagacctcggctgtattgagcctgctg
gaagtcgaagacttcgatgccctgatcatgttcgtccgcaccaagcaggcgacccttgat
ctggcaagcgctcttgaagccaaaggctacaaggctgctgcactgaacggcgacatcgcc
cagaaccagcgcgagcgcgttatcgaatccctcaaggatggccgtctggacatcgttgta
gcgaccgacgttgctgcccgtggtctcgacgttccgcgtatcacccacgtgttcaacgtg
gacatgccttacgatccagagtcctacgttcaccgtatcggccgtactggccgtgcaggt
cgcgaaggtcgtgcactgctgctggtcactcctcgcgagcgccgcatgctgcaagtgatc
gagcgtgttaccggtcagaaggttgcggaagtccgcctgccggatgcccaggccgtcctg
gatgcgcgcatcaagaaactgaccaacagcctgtcgccgctggtagctgatgccgagtcg
actcacggtgatctgctggatcgtctgactgccgatatcggttgcagccctcgtgccctt
gctgctgcattgctgcgcaaggctaccaacggtcaggctctgaccctggcagccatcgag
cgcgagcgtccactggttccgaacaacgcgcctcgcggtgatcgtccagagcgcagcggt
agcagcgaccgtggtgatcgtcctgagcgtgagcgtcgtgcgccggttccattggccgaa
ggccgtgctcgttgccgtaccgcgctgggtgcgcgtgacggtatcgctgccaagaacctg
ctgggtgccatcctcaacgaaggcggccttgcccgcgaagcgatcggccgtatccaggtc
cgtgacagcttcagcctggtcgaactgccggaagatggtcttgagcgtctgttgaccaag
ctcaaggacacccgcgttgctggcaagcagctcaagctgcgtcgctatcgcgaagactga
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