Pseudomonas syringae CC1557: N018_08340
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Entry
N018_08340 CDS
T03014
Name
(GenBank) RNA polymerase sigma 70
KO
K02405
RNA polymerase sigma factor FliA
Organism
psyr
Pseudomonas syringae CC1557
Pathway
psyr02020
Two-component system
psyr02025
Biofilm formation - Pseudomonas aeruginosa
psyr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
psyr00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
N018_08340
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
N018_08340
09142 Cell motility
02040 Flagellar assembly
N018_08340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psyr03021
]
N018_08340
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
psyr02035
]
N018_08340
Transcription machinery [BR:
psyr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
N018_08340
Bacterial motility proteins [BR:
psyr02035
]
Flagellar system
Flagellar assembly proteins
Stator
N018_08340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
HTH_23
HTH_30
UPF0122
MarR_2
GerE
Rv2175c_wHTH
Phage_terminase
Motif
Other DBs
NCBI-ProteinID:
AHG40254
UniProt:
W0MNV8
LinkDB
All DBs
Position
1746733..1747473
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AA seq
246 aa
AA seq
DB search
MTASGYQMYSKTSRNSQYELIERYAPLVKRIAYHLLARLPASVQVEDLIQAGMIGLLEVS
TKYDSTKGASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAIRAIEAKTGRDAK
DHEVAAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGDHEGLHEDGASGSLEPSRDLEDE
RFQAALADAIANLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRGRL
GEWRAR
NT seq
741 nt
NT seq
+upstream
nt +downstream
nt
atgactgcgagcggctatcagatgtacagcaagacttctcgtaactcacaatatgagctg
atcgagcggtatgcaccgctggtcaaacgtattgcctaccacttgctggcgcgtttgccg
gccagtgtgcaggtcgaggatctgattcaggccggcatgatcggtctgcttgaagtctct
accaaatatgactccaccaaaggtgcgagtttcgagacctatgccggtattcgcatccgt
ggagccatgctcgacgaagtgcgcaagggtgactgggcgcctcgctcggtgcaccgaaat
acccgcatggtcagtgacgcaattcgcgcaattgaagctaaaaccggacgtgacgctaaa
gatcacgaggttgcggccgaactccagttgagtcttgatgattattacgggattttgaat
gataccttgggcagccgcctcttcagtttcgacgacctgttacaggacggcgatcatgaa
gggctgcacgaggacggcgcgagcggttcgctcgagccgtcgcgcgacctggaagacgag
cgcttccaggccgcgttggccgatgcaattgccaatttgccggagcgtgagcgtctggtg
ttggcgctgtactatgacgaagagctgaacctgaaggaaatcggagaggttctaggggtc
agcgaatcgcgagtcagtcagttacacagccagtgcgcagctcgtttgcgagggcgtttg
ggggagtggcgagcgcgttga
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